Pairwise Alignments

Query, 325 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 339 a.a., dipeptide ABC transporter permease DppB from Erwinia tracheiphila SCR3

 Score =  207 bits (528), Expect = 2e-58
 Identities = 121/335 (36%), Positives = 189/335 (56%), Gaps = 17/335 (5%)

Query: 1   MFSFLVKRLYQALIVMFVISLVAFAIQDNL-GDPLRELVGQSVSEAERQA-LRDELGLND 58
           M  F+++RL   +     I+L+ FA    + GDP+  + G+     ER A L  ++GL+ 
Sbjct: 1   MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVLIMAGERGMSPERHAQLLAQMGLDK 60

Query: 59  PFIIKYSRFVTAAVQGDLGTSYFFKRPALEVIFDKLVATLELVFGATLIIIVFSIPLGVY 118
           P   +Y  ++   + GDLG S   + P  +    +  ATLEL   A +  I   IP+GV 
Sbjct: 61  PLWQQYIAYIQGVLHGDLGISLKSRIPVWQEFVPRFKATLELGICAMIFAIAVGIPVGVL 120

Query: 119 SAIHPKSLFTKIVMAGSSIGISIPVFLTAIMLMYVFSIELGWLPSYGR-GETVNL----- 172
           +A+   S+F    +  S  G S+P+F   +ML+ + S++L   P  GR G+TV L     
Sbjct: 121 AAVKRGSIFDHTAVGISLTGYSMPIFWWGMMLIMLVSVQLNLTPVAGRIGDTVFLDDSKP 180

Query: 173 ---------LGWESGFFTLDGLRHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKFA 223
                    L W       D + H++LP+I L +I L + +R+ RS MLEVL  +YI+ A
Sbjct: 181 LTGFMLIDTLLWGEPGDVKDAVMHMILPAIVLGTIPLAVIVRMTRSAMLEVLGEDYIRTA 240

Query: 224 QAKGLPLNKIYYQHALKNTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINR 283
           +AKGL   ++   HAL+N MLPV+TV G+Q+GT++A  ILTET+F WPG G   ++A+ R
Sbjct: 241 RAKGLTPLRVIVVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQR 300

Query: 284 VDTPLITAYVIFVGLIFVVTNTIVDLLYGLINPTV 318
            D P++ + V+ V  + ++ N +VDLLYG++NP +
Sbjct: 301 RDYPVVQSGVLMVATLIILVNLLVDLLYGVVNPRI 335