Pairwise Alignments

Query, 325 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 339 a.a., ABC-type dipeptide/oligopeptide/nickel transport systems, permease components from Enterobacter asburiae PDN3

 Score =  203 bits (517), Expect = 4e-57
 Identities = 119/336 (35%), Positives = 187/336 (55%), Gaps = 19/336 (5%)

Query: 1   MFSFLVKRLYQALIVMFVISLVAFAIQDNL-GDPLRELVGQSVSEAERQA-LRDELGLND 58
           M  F+++RL   +     I+L+ FA    + GDP+  + G+     ER A L  ELGL+ 
Sbjct: 1   MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLAELGLDK 60

Query: 59  PFIIKYSRFVTAAVQGDLGTSYFFKRPALEVIFDKLVATLELVFGATLIIIVFSIPLGVY 118
           P   +Y  ++   + GDLG S   + P  +    +  ATLEL   A +      IP+GV 
Sbjct: 61  PMWQQYLHYIWGVLHGDLGISLKSRLPVWDEFVPRFKATLELGVCAMIFATAVGIPVGVL 120

Query: 119 SAIHPKSLFTKIVMAGSSIGISIPVFLTAIMLMYVFSIELGWLPSYGRGETVNLLG---- 174
           +A+   S+F    +  +  G S+P+F   +ML+ + S++L   P  GR   +  L     
Sbjct: 121 AAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVQLNLTPVSGRVSDMVFLDDSNP 180

Query: 175 -----------W-ESGFFTLDGLRHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKF 222
                      W E G F +D + H++LP++ L +I L + +R+ RS MLEVL  +YI+ 
Sbjct: 181 LTGFMLIDTAIWGEEGNF-IDAVAHMILPAMVLGTIPLAVIVRMTRSSMLEVLGEDYIRT 239

Query: 223 AQAKGLPLNKIYYQHALKNTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAIN 282
           A+AKGL   ++   HAL+N MLPV+TV G+Q+GT++A  ILTET+F WPG G   ++A+ 
Sbjct: 240 ARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQ 299

Query: 283 RVDTPLITAYVIFVGLIFVVTNTIVDLLYGLINPTV 318
           R D P++   V+ V  + ++ N +VDLLYG++NP +
Sbjct: 300 RRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRI 335