Pairwise Alignments

Query, 325 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 306 a.a., ABC-type dipeptide/oligopeptide/nickel transport systems, permease components from Enterobacter asburiae PDN3

 Score =  190 bits (482), Expect = 4e-53
 Identities = 100/319 (31%), Positives = 171/319 (53%), Gaps = 17/319 (5%)

Query: 1   MFSFLVKRLYQALIVMFVISLVAFAIQDNL-GDPLRELVGQSVSEAERQALRDELGLNDP 59
           M +++ KRL   +  + +++++ F     L GDP R + G          +R +LGL+ P
Sbjct: 1   MLNYVCKRLLGLIPTLLIVAVLVFLFVHMLPGDPARLVAGPEADATVIDLVRKQLGLDQP 60

Query: 60  FIIKYSRFVTAAVQGDLGTSYFFKRPALEVIFDKLVATLELVFGATLIIIVFSIPLGVYS 119
             +++  ++   +QGD G S   +RP  E I  + + T  L   +    +VF +  G+ +
Sbjct: 61  LYMQFIHYICNVLQGDFGISMVSRRPVSEEIASRFMPTFWLTIASMCWAVVFGLGAGIIA 120

Query: 120 AIHPKSLFTKIVMAGSSIGISIPVFLTAIMLMYVFSIELGWLPSYGRGETVNLLGWESGF 179
           A+       K+ MA +  GIS P F   ++LM +FS+ELGWLP+ G              
Sbjct: 121 AVWRNRWPDKLGMALAVTGISFPAFALGMLLMQIFSVELGWLPTVGA------------- 167

Query: 180 FTLDGLRHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKFAQAKGLPLNKIYYQHAL 239
              D  +H +LPS+ L + +  +  R  R+  ++VLS +YI+ A+AKG+    +  +H  
Sbjct: 168 ---DTWKHYILPSMTLGAAVSAVMARFTRASFVDVLSEDYIRTARAKGVSEKWVILKHGF 224

Query: 240 KNTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVDTPLITAYVIFVGLI 299
           +N M+PV+T+ G+Q G ++  +I+ E VF WPG G L ++++   D P+I A V+   L 
Sbjct: 225 RNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEVLLFSLE 284

Query: 300 FVVTNTIVDLLYGLINPTV 318
           F++ N +VD+LY  INP +
Sbjct: 285 FILINLVVDVLYAAINPAI 303