Pairwise Alignments

Query, 325 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 340 a.a., ABC-type dipeptide/oligopeptide/nickel transport systems, permease components from Enterobacter asburiae PDN3

 Score =  198 bits (504), Expect = 1e-55
 Identities = 120/335 (35%), Positives = 185/335 (55%), Gaps = 14/335 (4%)

Query: 2   FSFLVKRLYQALIVMFVISLVAFAIQDNL-GDPLRELVGQSVSEAERQALRDELGLNDPF 60
           +S + +R +  ++V+  + ++ F I   + GDP R L G   S+   Q +R +LGL+ P 
Sbjct: 4   WSIVRQRCWGLILVVAGVCIITFIISHLIPGDPARLLAGDRASDEIVQNIRQQLGLDRPL 63

Query: 61  IIKYSRFVTAAVQGDLGTSYFFKRPALEVIFDKLVATLELVFGATLIIIVFSIPLGVYSA 120
            I++ R+V A   GDLGTS    RP  E +     ATLEL F + L+ +V  +PLG+ SA
Sbjct: 64  YIQFGRYVDALAHGDLGTSIRTGRPVAEDLKAFFPATLELAFCSLLLALVIGVPLGILSA 123

Query: 121 IHPKSLFTKIVMAGSSIGISIPVFLTAIMLMYVFSIELGWLPSYGR-GETVNLLGWESGF 179
           ++       +V   +  GIS P F   + ++ +F   L  LP  GR  + ++     +GF
Sbjct: 124 VYRNRWLDHLVRLMAMTGISTPAFWLGLGVIVLFYGHLQILPGGGRLDDWLDPPTHVTGF 183

Query: 180 FTLDGL------------RHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKFAQAKG 227
           + LD L            +HL+LPS+ LA + L +  R VRS MLE LS +YI+ A+A G
Sbjct: 184 YLLDALLEGNGEVFFNALQHLILPSLTLAFVHLGIVARQVRSAMLEQLSEDYIRTARASG 243

Query: 228 LPLNKIYYQHALKNTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVDTP 287
           LP   I  ++AL N M+P +TV G+ +G ++   +LTETVF WPG G   + +I  +D P
Sbjct: 244 LPGGYIVLRYALPNAMIPSITVLGLALGDLLYGAVLTETVFAWPGMGAWVVTSIQALDFP 303

Query: 288 LITAYVIFVGLIFVVTNTIVDLLYGLINPTVNLTG 322
            +  + + V L +V+ N +VDLLY  I+P +   G
Sbjct: 304 AVMGFAVVVSLAYVLVNLVVDLLYLWIDPRIGRGG 338