Pairwise Alignments

Query, 325 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 314 a.a., nickel ABC transporter permease subunit NikB from Escherichia coli ECRC62

 Score =  171 bits (434), Expect = 2e-47
 Identities = 99/322 (30%), Positives = 178/322 (55%), Gaps = 20/322 (6%)

Query: 1   MFSFLVKRLYQALIVMFVISLVAFA-IQDNLGDPLRELVGQSVSEAERQAL---RDELGL 56
           M  ++++R    + ++   S++ F  ++   GDP  + +  S      + L   R  LGL
Sbjct: 1   MLRYVLRRFLLLIPMVLAASVIIFLMLRLGTGDPALDYLRLSNLPPTPEMLASTRTMLGL 60

Query: 57  NDPFIIKYSRFVTAAVQGDLGTSYFFKRPALEVIFDKLVATLELVFGATLIIIVFSIPLG 116
           + P  ++Y  ++  A+  D G S+  +RP L+ + + L ATLEL   A ++I++ S+PLG
Sbjct: 61  DQPLYVQYGTWLWKALHLDFGISFASQRPVLDDMLNFLPATLELAGAALVLILLTSVPLG 120

Query: 117 VYSAIHPKSLFTKIVMAGSSIGISIPVFLTAIMLMYVFSIELGWLPSYGRGETVNLLGWE 176
           +++A H   L    V   + +G+S+P F  A +L+  FS+ L WLP+ G G      GW+
Sbjct: 121 IWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSVYLQWLPAMGYG------GWQ 174

Query: 177 SGFFTLDGLRHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKFAQAKGLPLNKIYYQ 236
                     H++LP++++A + L +  RL+R+ ML+V    ++ +A+ +GL   +   +
Sbjct: 175 ----------HIILPAVSIAFMSLAINARLLRASMLDVAGQRHVTWARLRGLNDKQTERR 224

Query: 237 HALKNTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVDTPLITAYVIFV 296
           H L+N  LP++T  G+ IG ++  T++ E +F WPG G   + AI   D P+I  + + +
Sbjct: 225 HILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMM 284

Query: 297 GLIFVVTNTIVDLLYGLINPTV 318
            ++FVV N IVDLL   ++P +
Sbjct: 285 VVVFVVCNLIVDLLNAALDPRI 306