Pairwise Alignments

Query, 325 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., Dipeptide transport system permease protein DppB from Azospirillum sp. SherDot2

 Score =  202 bits (515), Expect = 7e-57
 Identities = 117/332 (35%), Positives = 180/332 (54%), Gaps = 14/332 (4%)

Query: 1   MFSFLVKRLYQALIVMFVISLVAFAIQDNL-GDPLRELVGQSVSEAER-QALRDELGLND 58
           M  F++ R+   +     I+ + F +   + GDP+   VG+     +R  ALR ELGL+ 
Sbjct: 1   MLRFILTRVSLVIPTFLGITFLTFILIRLVPGDPIEVRVGERGIAPDRLAALRHELGLDQ 60

Query: 59  PFIIKYSRFVTAAVQGDLGTSYFFKRPALEVIFDKLVATLELVFGATLIIIVFSIPLGVY 118
               ++  +V   + GD G S       L        ATLEL   A L   +  +P G+ 
Sbjct: 61  SLWQQFLDYVGNVLSGDFGLSLVTHNSVLSEFVTLFPATLELALCAMLFATLVGLPAGIL 120

Query: 119 SAIHPKSLFTKIVMAGSSIGISIPVFLTAIMLMYVFSIELGWLPSYGRGETVNLLGWESG 178
           +A+   SLF   VM  S  G S+P+F   ++L+  FS+ LGW P  GR + V  +   +G
Sbjct: 121 AAVKRGSLFDHGVMGASLTGYSMPIFWWGLLLILFFSVALGWTPVSGRLDLVYYVEPVTG 180

Query: 179 FFTLD------------GLRHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKFAQAK 226
           F  +D             L HL+LP+I L ++ L +  R+ RS MLEVL  +YI+ A+AK
Sbjct: 181 FMLIDTLMAGDYEAFRSALSHLILPTIVLGTVPLAVVARMTRSAMLEVLGEDYIRTARAK 240

Query: 227 GLPLNKIYYQHALKNTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVDT 286
           GL   ++   HAL+N ++PV+TV G+Q+GT++   ILTET+F WPG G   +E+INR D 
Sbjct: 241 GLASGRVIGMHALRNALIPVVTVIGLQVGTLLGGAILTETIFSWPGVGKWLIESINRRDY 300

Query: 287 PLITAYVIFVGLIFVVTNTIVDLLYGLINPTV 318
           P +   V+ +    ++ N +VD+LYG++NP +
Sbjct: 301 PALQGGVLLIATSVILVNLLVDVLYGVLNPRI 332