Pairwise Alignments

Query, 325 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 313 a.a., Dipeptide transport system permease protein DppB from Azospirillum sp. SherDot2

 Score =  188 bits (477), Expect = 2e-52
 Identities = 108/319 (33%), Positives = 178/319 (55%), Gaps = 9/319 (2%)

Query: 1   MFSFLVKRLYQALIVMFVISLVAFAIQDNL-GDPLRELVGQSVSEAERQALRDELGLNDP 59
           M  ++V+R    ++VM ++++V F I   + GDP   ++G S +  +  ALR  LGL++P
Sbjct: 1   MLVYIVRRFAGMMVVMLLVAMVVFLIARVVPGDPAAVMLGSSATPDDIAALRGRLGLDEP 60

Query: 60  FIIKYSRFVTAAVQGDLGTSYFFKRPALEVIFDKLVATLELVFGATLIIIVFSIPLGVYS 119
            + ++  ++   V+ DLG S F  RP  + + ++   T  L   +  I ++  +P+G+ S
Sbjct: 61  LLTQFLLYLGQIVRFDLGDSIFLNRPVAQALAERSELTGLLTMMSVGIAMLIGVPVGILS 120

Query: 120 AIHPKSLFTKIVMAGSSIGISIPVFLTAIMLMYVFSIELGWLPSYGRGETVNLLGWESGF 179
           A     L  +  +  + +  SIP F   + L+   +++  W P  G G     L      
Sbjct: 121 AAKRGGLVDQTAVGLAMLAASIPSFWIGLTLIKYLAVDHAWFPVAGYGPPDADL------ 174

Query: 180 FTLDGLRHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKFAQAKGLPLNKIYYQHAL 239
             L+ +RHLVLP+IAL      L +R  R+ ML+V+S +Y++ A+AKGLP   +  +HAL
Sbjct: 175 --LERMRHLVLPAIALGIPNSALILRFTRTSMLDVMSHDYVRTARAKGLPPLVVVLKHAL 232

Query: 240 KNTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVDTPLITAYVIFVGLI 299
           +N M+P+LTV G+    M+A  I+TETVF  PG G L + A+ R D P+I   ++ V  I
Sbjct: 233 RNAMIPILTVIGLTTAVMIAGAIVTETVFGLPGVGNLIVSAVLRRDYPVIQGALLVVSAI 292

Query: 300 FVVTNTIVDLLYGLINPTV 318
           +V+ N  VDLLY +++P V
Sbjct: 293 YVLINLTVDLLYAVVDPRV 311