Pairwise Alignments

Query, 325 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 308 a.a., ABC transporter, membrane spanning protein (agrocinopine) from Agrobacterium fabrum C58

 Score =  171 bits (434), Expect = 2e-47
 Identities = 102/324 (31%), Positives = 164/324 (50%), Gaps = 16/324 (4%)

Query: 1   MFSFLVKRLYQALIVMFVISLVAFAIQDNLGDPLRELVGQSVSEAERQALRDELGLNDPF 60
           M SF++ RL +A+IVM +     F I    GDP R ++G++ +     A R   GL+   
Sbjct: 1   MISFILARLVRAIIVMMLTVTFVFIILRLGGDPARAMLGENATPEALAAFRTAWGLDRSI 60

Query: 61  IIKYSRFVTAAVQGDLGTSYFFKRPALEVIFDKLVATLELVFGATLIIIVFSIPLGVYSA 120
             ++  ++ +A++GD G S    R    VI +++  TL L   A ++ I+  IP G+ +A
Sbjct: 61  PEQFLIYLASALRGDFGVSAADGREVFTVISERIPKTLTLTISAFVLSILVGIPAGIIAA 120

Query: 121 IHPKSLFTKIVMAGSSIGISIPVFLTAIMLMYVFSIELGWLPSYGRGETVNLLGWESGFF 180
           +   S   K VMAG+ +G S+P FL  + L++VF++    LPS G         W+    
Sbjct: 121 VRRDSAADKSVMAGAVLGYSVPNFLLGLTLIFVFAVWFRVLPSSGSST------WQ---- 170

Query: 181 TLDGLRHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKFAQAKGLPLNKIYYQHALK 240
                 H +LP      +      R  RS ++EVL   YI  A+A G+P  ++  +HAL 
Sbjct: 171 ------HAILPVATFGLVNAAAIARFARSALIEVLEQPYIAAARADGIPKWEVVIRHALP 224

Query: 241 NTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVDTPLITAYVIFVGLIF 300
           N  +P++T+ G     ++  + + ETVF WPG G  F+ AI   D  ++ A ++      
Sbjct: 225 NAAIPMVTMLGFVAAGLLGGSAIVETVFAWPGLGSGFVRAITLSDLNVVQAMILLFTAFM 284

Query: 301 VVTNTIVDLLYGLINPTVNLTGKG 324
           V  N IVD+LY ++NP + L   G
Sbjct: 285 VTINLIVDVLYAVLNPKIRLQKNG 308