Pairwise Alignments

Query, 325 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 322 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  294 bits (753), Expect = 2e-84
 Identities = 142/316 (44%), Positives = 218/316 (68%)

Query: 1   MFSFLVKRLYQALIVMFVISLVAFAIQDNLGDPLRELVGQSVSEAERQALRDELGLNDPF 60
           M  F++KRL  A++VM  ++L+AF I    GDP+  +VG+  S+ +R ALR+ LGLND  
Sbjct: 1   MLVFIIKRLGNAVLVMLSVALIAFLIFRLAGDPVELMVGEQTSQEDRAALRERLGLNDSL 60

Query: 61  IIKYSRFVTAAVQGDLGTSYFFKRPALEVIFDKLVATLELVFGATLIIIVFSIPLGVYSA 120
             +Y RFV  A QG+ G SY   +  L +I ++  ATLELV  AT+I +V  +PLGV +A
Sbjct: 61  PTQYLRFVKDAAQGNFGVSYRNGQQVLPLIAERFPATLELVLVATVISLVVGLPLGVLTA 120

Query: 121 IHPKSLFTKIVMAGSSIGISIPVFLTAIMLMYVFSIELGWLPSYGRGETVNLLGWESGFF 180
           I     +T+ +   S +G+S+P F+  I+L+ VFS+ LGW P++GRG+ V L  W +G  
Sbjct: 121 IRRGKWYTEGLQFLSIVGVSLPSFVVGILLILVFSVSLGWAPAFGRGDVVQLGWWSTGLL 180

Query: 181 TLDGLRHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKFAQAKGLPLNKIYYQHALK 240
           T  G   L+LP+IAL+   + L +RLVR+EMLEVL S+++KFA+A+G+P  +IY++HAL+
Sbjct: 181 TSSGRAALILPAIALSLYQITLVMRLVRAEMLEVLRSDFVKFARARGIPRWRIYFRHALR 240

Query: 241 NTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVDTPLITAYVIFVGLIF 300
           N ++PV+T+  + +G+++A+ ++TETVFQWPG G LF++A+  +D P++ AY+  +  IF
Sbjct: 241 NCLMPVVTLTTMNVGSLIAFALITETVFQWPGMGMLFIQAVTFLDIPVMAAYLCIISFIF 300

Query: 301 VVTNTIVDLLYGLINP 316
           VV NT VD+ Y +I+P
Sbjct: 301 VVLNTFVDIAYAVIDP 316