Pairwise Alignments

Query, 325 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 264 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  179 bits (453), Expect = 9e-50
 Identities = 97/277 (35%), Positives = 152/277 (54%), Gaps = 16/277 (5%)

Query: 42  VSEAERQALRDELGLNDPFIIKYSRFVTAAVQGDLGTSYFFKRPALEVIFDKLVATLELV 101
           ++E +   +R  LG + PF ++Y  F+   V  D G S+    P   +I D L ATL L 
Sbjct: 1   MTEDDLARIRAALGTDRPFFVQYFSFLKGLVTLDFGRSFTGSTPVSRLIADALPATLLLA 60

Query: 102 FGATLIIIVFSIPLGVYSAIHPKSLFTKIVMAGSSIGISIPVFLTAIMLMYVFSIELGWL 161
           F +  + I  SIPLG+ +A        +++   S IG+S P F  A ML+ +FSI LGWL
Sbjct: 61  FISMAVSIALSIPLGIKAATSRGKTADQVIRIFSLIGLSFPNFWLATMLVLLFSITLGWL 120

Query: 162 PSYGRGETVNLLGWESGFFTLDGLRHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIK 221
           P  G G                G    ++PS+ +  I+    +RLVR+ ML+ L S+Y+ 
Sbjct: 121 PPSGMG----------------GFASYIMPSVTMGVILTATNVRLVRTAMLDTLRSQYVM 164

Query: 222 FAQAKGLPLNKIYYQHALKNTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAI 281
            A+AKGL  +K+ Y+HAL+N  +P++T  G+Q G ++   ++ E VF WPG G L  +A+
Sbjct: 165 VARAKGLSESKVLYKHALRNCAIPLITYFGLQFGGLLGGIVVIERVFNWPGLGTLAFDAV 224

Query: 282 NRVDTPLITAYVIFVGLIFVVTNTIVDLLYGLINPTV 318
              D P++ A +  + L+ V  N +VD+ YGL++P +
Sbjct: 225 GARDYPVLQAVITVLSLMIVGINLLVDIAYGLVDPRI 261