Pairwise Alignments

Query, 325 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 316 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  191 bits (485), Expect = 2e-53
 Identities = 107/317 (33%), Positives = 177/317 (55%), Gaps = 9/317 (2%)

Query: 1   MFSFLVKRLYQALIVMFVISLVAFAIQDNL-GDPLRELVGQSVSEAERQALRDELGLNDP 59
           M + L++RL   +I +F +SL+ + +   L GDP   ++G S S     AL+ ++GL+ P
Sbjct: 1   MLAVLIRRLVSLIITLFAVSLIIYVVMGLLPGDPAAIMLGTSASPDTLAALQKQMGLDQP 60

Query: 60  FIIKYSRFVTAAVQGDLGTSYFFKRPALEVIFDKLVATLELVFGATLIIIVFSIPLGVYS 119
             ++Y  ++    +GDLG SY +  P   +I ++L  TL L   A  + +  +IPLGV +
Sbjct: 61  LPLRYLHWLAGVFRGDLGQSYTYGVPVAGLIIERLAVTLPLALLAIFLSVTIAIPLGVAA 120

Query: 120 AIHPKSLFTKIVMAGSSIGISIPVFLTAIMLMYVFSIELGWLPSYGRGETVNLLGWESGF 179
           A +            S +GI++P F   ++L+ VFS  LGW+PS G        GW   F
Sbjct: 121 AQNRNGALDFAAGLFSHVGIAVPGFWVGLLLIIVFSTTLGWMPSGG------FPGWSPSF 174

Query: 180 FTLDGLRHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKFAQAKGLPLNKIYYQHAL 239
               GL  LVLP+IALA     +  R+ RS +LEV++ ++++ A+AKGL      ++HA+
Sbjct: 175 SA--GLVALVLPAIALALSQAGVLTRVCRSAVLEVMNEDFVRTARAKGLSERVALWRHAV 232

Query: 240 KNTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVDTPLITAYVIFVGLI 299
            N M+PV+T+ G+Q   ++A  +L E VF  PG G L  +A+ + D  ++ + V+F   +
Sbjct: 233 PNAMIPVVTMIGLQFTFLIAGAVLVENVFNLPGLGRLAYQALTQRDIVVMQSVVLFFSAL 292

Query: 300 FVVTNTIVDLLYGLINP 316
            ++ N +VD+ Y  I+P
Sbjct: 293 VIIMNFVVDIAYLFIDP 309