Pairwise Alignments

Query, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 533 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  147 bits (370), Expect = 1e-39
 Identities = 138/506 (27%), Positives = 215/506 (42%), Gaps = 48/506 (9%)

Query: 12  LIAAGL----SFGAMAADITVAYDADPVSMDPHEQLSGGTLQLS-HMVFDPLIRFTQK-M 65
           L+AAGL         A+ +    +A P   DP +  SG     S   VF+ L +F +   
Sbjct: 10  LLAAGLLACMPLAQAASTLVYCSEASPAGFDPSQYTSGTDFDASAETVFNRLTQFKRGGT 69

Query: 66  EFEPRLAESWQ-RVDNETMRFTLRKGVKFHSGN------DFTADDVVWTFNRL------- 111
           E EP LA SW    D  T  F LR GVKFH+ +      DF ADDV++TFNRL       
Sbjct: 70  EVEPGLATSWDISQDGLTYTFHLRDGVKFHTTDFFSPTRDFNADDVLFTFNRLLDAQSPF 129

Query: 112 -----KESADFK--GIFEPLVSLTKVDDYTIEIKTAGT-YPLIENVATYIFPMDSKFYTG 163
                 ES  F   G+   + S+ K+DD+T+           ++N+A     + S  Y  
Sbjct: 130 RQAYPSESPYFTDMGLNTTIKSVDKLDDHTVRFNLNNVDASFVQNLAMSFASVQSAEYA- 188

Query: 164 TTADGKNKAEIVKHGNSFA-SENISGTGPFTVTAREQGVKLEFQRNPNYWDKASKGNVDK 222
                   A+++K G +   ++   GTGPF     ++  ++ +  N  YW K     +D 
Sbjct: 189 --------AQLLKQGKAEEINQKPVGTGPFVFKRYQKDSQIRYVANKQYW-KPEDVKLDN 239

Query: 223 LTLAVIKEDATRVAALLSGGVDMIAPVSPNDYQRIKDAKGVDLFTMPGTRVITFQMNQNS 282
           L  A+  + A+R+  L +G   +     P D + +K    + +    G   + F     +
Sbjct: 240 LVFAITPDAASRLQKLKAGECQVSGYPRPADIEVMKQDPNLHVLQQAGFN-LGFLAYNVT 298

Query: 283 NPALKDVRVRQAIVYAINNEGIVDKVMKGAATTAAQQSPVGYAGYNENLKPR-FDLNKAK 341
           +P L  ++VRQA+  AI+   I+  V + A   A    P     Y+  +K   +D  KAK
Sbjct: 299 HPPLDQLKVRQALDMAIDKPAIIKAVYQSAGQLAQNALPPAQWSYDPTIKDAPYDPTKAK 358

Query: 342 ELMKEAGYEKGFNLTMIAPNNRYV---NDEKIAQAASAMLSKIGIKVDLKTMPKAQYWPE 398
            L+KEAG   G  + + A   +     N    AQ       K+GIK ++ +    +Y   
Sbjct: 359 ALLKEAGVAPGTTVNLWAMTVQRASNPNARMSAQMIQQDWEKVGIKANIVSYEWGEYIKR 418

Query: 399 FDKCAADMLMIGWHPDTEDSANFTEFLTMTRDSNTGKGQYNCGYYSNAEVDKLVNAANEE 458
                 D ++ GW  D  D  N   +L +       KG  N   + N   DKLV  A   
Sbjct: 419 AKNGEHDAMIYGWTGDNGDPDN---WLGVLYSCAAVKGS-NYAKWCNPAYDKLVQQAKVS 474

Query: 459 TDLEKRSTMLKKVEEILYNEAAFVPL 484
            D E+R    ++ ++IL  +    P+
Sbjct: 475 NDREQRIKWYQQAQKILKEQVPITPI 500