Pairwise Alignments

Query, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 542 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  143 bits (361), Expect = 1e-38
 Identities = 139/525 (26%), Positives = 231/525 (44%), Gaps = 62/525 (11%)

Query: 4   MKNKLALALIAAGLS----FGAMAADITVAYDADPVSMDPHEQLSGGTLQLS-HMVFDPL 58
           +K+ +   +++AGL     F   A ++    +  P   DP +  +G     S   +F+ L
Sbjct: 2   LKHAVIPLIVSAGLMAAAPFAQAATNLVFCSEGSPAGFDPGQYTTGTDFDASAETMFNRL 61

Query: 59  IRFTQK-MEFEPRLAESWQ-RVDNETMRFTLRKGVKFHSGN------DFTADDVVWTFNR 110
            +F +      P LA SW    D  T  F LR GVKFH+ +       F ADDV++TFNR
Sbjct: 62  TQFERGGTAVIPGLATSWDVSPDGLTYTFHLRDGVKFHTTSYFKPTRTFNADDVLFTFNR 121

Query: 111 LKESAD-FK-------------GIFEPLVSLTKVDDYTIEIKTAGTYP--LIENVATYIF 154
           +    D F+             G+   + ++ KVD++T++  T GT     I+N+A    
Sbjct: 122 MINKDDPFRKAYPTEFPYFTDMGMDTNIKNIEKVDEHTVKF-TLGTVDAAFIQNLAMSFA 180

Query: 155 PMDSKFYTGTTADGKNKAEIVKHGN-SFASENISGTGPFTVTAREQGVKLEFQRNPNYWD 213
            + S  Y          A+++K G  +  ++   GTGPF   + ++   + +  N +YW 
Sbjct: 181 SIQSAEYA---------AQLLKEGKPADINQKPIGTGPFVFKSYQKDSNIRYTGNKDYW- 230

Query: 214 KASKGNVDKLTLAVIKEDATRVAALLSGGVDMIAPVSPNDYQRIKDAKGVDLFTMPGTRV 273
           K     +D L  A+  + + R+  L      +     P D + + D K + L    G  +
Sbjct: 231 KPEDVKIDNLIFAITTDPSVRIQKLKKNECQITLFPRPADLKALGDDKDLKLPHQAGFNL 290

Query: 274 ITFQMN--------QNSNPALKDVRVRQAIVYAINNEGIVDKVMKGAATTAAQQSPVGYA 325
                N           NP L D+RVRQA+  ++N + I+D V +GA   A    P    
Sbjct: 291 GYIAYNVMDKVKGSDQPNP-LADLRVRQALDMSVNKQQIIDSVYQGAGQLAVNAMPPTQW 349

Query: 326 GYNENLK-PRFDLNKAKELMKEAGYEKGFNLTMIA-PNNRYVNDEKIAQAASAMLSKIGI 383
            Y+  +K  ++D  KAK L+KEAG ++G  + + A P  R  N    A+  + ML     
Sbjct: 350 SYDTTIKDAKYDPEKAKSLLKEAGIKEGTEIVLWAMPVQRPYNPN--AKLMAEMLQNDWK 407

Query: 384 KVDLKTMPKAQYWPEFDKCAA----DMLMIGWHPDTEDSANFTEFLTMTRDSNTGKGQYN 439
           K+ L     +  W E+ K +       ++IGW  D  D  N+   L    DS +G    N
Sbjct: 408 KIGLNVKITSYEWGEYIKRSKGGENQAMIIGWSGDNGDPDNWLNVL-FGCDSLSGN---N 463

Query: 440 CGYYSNAEVDKLVNAANEETDLEKRSTMLKKVEEILYNEAAFVPL 484
              + + + D +V  A   +D+ KR+ + K+ + IL +     P+
Sbjct: 464 FSKWCDKKFDGIVKEAKATSDVAKRTELYKQAQHILKDAVPMTPI 508