Pairwise Alignments

Query, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 543 a.a., Dipeptide ABC transporter, substrate-binding protein DppA (TC 3.A.1.5.2) from Variovorax sp. SCN45

 Score =  152 bits (383), Expect = 4e-41
 Identities = 133/498 (26%), Positives = 213/498 (42%), Gaps = 41/498 (8%)

Query: 11  ALIAAGLSFGAMAADITV-AYDADPVSMDPHEQLSGGTLQLSHMVFDPLIRFTQK-MEFE 68
           A+ A  L+ GA++A   V   +  P +  P    +G +  ++  V++ ++ F +   +  
Sbjct: 21  AIAALTLACGAVSAKTLVYCSEGSPENFYPGMNTTGTSFDVTTQVYNTIVEFERGGTKVV 80

Query: 69  PRLAESWQ-RVDNETMRFTLRKGVKFHSGN-------DFTADDVVWTFNRLKESAD--FK 118
           P LAE W    D     F LRKGVK+H+ +       DF ADD ++   R  + +D  FK
Sbjct: 81  PGLAEKWDISADGTVYTFHLRKGVKWHTTSKSFKPTRDFNADDFIFMLERQWKESDPFFK 140

Query: 119 ------------GIFEPLVSLTKVDDYTIEIK-TAGTYPLIENVATYIFPMDSKFYTGTT 165
                       G+ + L ++ ++DDYT++I       P + N+A     + SK Y    
Sbjct: 141 VTSQNHSYFNDMGMPKLLKTVDRIDDYTVKIVLNQPEAPFLANLAMQYAGIQSKEYAIAM 200

Query: 166 ADGKNKAEIVKHGNSFASENISGTGPFTVTAREQGVKLEFQRNPNYWDKASKGNVDKLTL 225
                  ++         ++  GTGPF +   ++   + F+  P YW    K  +D L  
Sbjct: 201 LKAGTPEKV--------DQDPIGTGPFYLVQYQKDAVIRFKAFPQYW--GGKAKIDDLVF 250

Query: 226 AVIKEDATRVAALLSGGVDMIAPVSPNDYQRIKDAKGVDLFTMPGTRVITFQMNQNSNPA 285
           A+  + + R A L  G   ++   +P D   I+    V +   PG  V     N    P 
Sbjct: 251 AITPDASVRWAKLQKGECHVMPYPNPADLDAIRKDPNVQVLEQPGLNVGYLSYNTTKKP- 309

Query: 286 LKDVRVRQAIVYAINNEGIVDKVMKGAATTAAQQSPVGYAGYNENLKPR-FDLNKAKELM 344
             DVRVR+AI  AIN + I+D V       A    P     YN+ +K   +D   AK+L+
Sbjct: 310 FDDVRVRKAINMAINKKAIIDGVYLTTGVAAKNPIPPTMWSYNDAVKDDPYDPEAAKKLL 369

Query: 345 KEAGYEKGFNLTMIA-PNNRYVND--EKIAQAASAMLSKIGIKVDLKTMPKAQYWPEFDK 401
            +AGY  GF+  + A P  R  N   ++IA+   A L+KI +K ++K+    +Y      
Sbjct: 370 AQAGYPDGFSTDLWAMPVQRPYNPNAKRIAELMQADLAKINVKAEIKSFEWGEYRKRLQA 429

Query: 402 CAADMLMIGWHPDTEDSANFTEFLTMTRDSNTGKGQYNCGYYSNAEVDKLVNAANEETDL 461
               M M+GW  D  D  NF   L     + +  G  N   +     + LV  A      
Sbjct: 430 GEHQMGMLGWTGDNGDPDNFLYTLLGCASAKSASGS-NISKFCYQPYEDLVVKAKSTVKQ 488

Query: 462 EKRSTMLKKVEEILYNEA 479
             R  + KK + I   +A
Sbjct: 489 ADRDALYKKAQVIFKEQA 506