Pairwise Alignments

Query, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

 Score =  139 bits (350), Expect = 3e-37
 Identities = 132/522 (25%), Positives = 239/522 (45%), Gaps = 56/522 (10%)

Query: 4   MKNKLALALIAAGLSFGA----MAADITVAYDADPVSMDPHEQLSGGTLQLS-HMVFDPL 58
           +K+ +   L+ AGL  GA     A+++    +  P   DP +  +G     S   VF+ L
Sbjct: 2   LKHAVIPFLLGAGLLSGAPSAVAASNLVFCSEGSPAGFDPGQYTTGTDFDASAETVFNRL 61

Query: 59  IRFTQK-MEFEPRLAESWQRVDN-ETMRFTLRKGVKFHS------GNDFTADDVVWTFNR 110
            +F +      P LA  W+  D+ +T  F LR+GVKFH+         F ADDV++TFNR
Sbjct: 62  TQFERGGTAVIPGLATKWEVSDDGKTYTFHLREGVKFHTTDYFKPSRPFNADDVLFTFNR 121

Query: 111 LKESAD-FK-------------GIFEPLVSLTKVDDYTIEIKTAGTYPLIENVATYIFPM 156
           + +  + F+             G+ + +  + K+D++T++      + L E  A +I  +
Sbjct: 122 MLDKDNPFRKAYPTEFPYFTDMGMDKNIAKVEKLDEHTVK------FTLNEVDAAFIQNL 175

Query: 157 DSKFYTGTTADGKNKAEIVKHGNSF-ASENISGTGPFTVTAREQGVKLEFQRNPNYWDKA 215
              F +  +A+  +  +++K+G +   ++   GTGPF  +  ++  ++ F+ N +YW   
Sbjct: 176 AMSFASIQSAEYAD--QLLKNGKAADINQKPIGTGPFVFSKYQKDAQIRFKGNKDYWQPE 233

Query: 216 SKGNVDKLTLAVIKEDATRVAALLSGGVDMIAPVSPNDYQRIKDAKGVDLFTMPGTRVIT 275
               +D L  A+  + + R+  L      +     P D + +K  K + +    G  +  
Sbjct: 234 DV-KIDNLIFAITTDASVRMQKLKKNECQVTLFPRPADIEPLKADKNLQMPQQAGFNLGY 292

Query: 276 FQMN-----QNSNPA--LKDVRVRQAIVYAINNEGIVDKVMKGAATTAAQQSPVGYAGYN 328
              N     + SN A  +  ++VRQA+  A++ + I++ V +GA   A    P     Y+
Sbjct: 293 IAYNVMDKIKGSNEANPMAQLKVRQALDMAVDKKKIIESVYQGAGQLAVNAMPPTQWSYD 352

Query: 329 ENLK-PRFDLNKAKELMKEAGYEKGFNLTMIA-PNNRYVND--EKIAQAASAMLSKIGIK 384
           +++K   FD  KAK+L+KEAG ++G  +T+ A P  R  N   + +A+   +  +KIGIK
Sbjct: 353 DSIKDAAFDPEKAKQLLKEAGIKEGTEITLWAMPVQRPYNPNAKLMAEMLQSDWAKIGIK 412

Query: 385 VDLKTMPKAQYWPEFDKCAADMLMIGWHPDTEDSANF--TEFLTMTRDSNTGKGQYNCGY 442
             + +    +Y           ++IGW  D  D  N+  T +     D N      N   
Sbjct: 413 AKIVSYEWGEYIKRSKGGEQGAMLIGWSGDNGDPDNWLGTLYGCDAVDGN------NFSK 466

Query: 443 YSNAEVDKLVNAANEETDLEKRSTMLKKVEEILYNEAAFVPL 484
           +     D L+  A   +D  KR+ + +K + IL  +    P+
Sbjct: 467 WCYKPYDDLIKQAKATSDQAKRTELYQKAQHILKEQVPITPI 508