Pairwise Alignments

Query, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 523 a.a., Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  259 bits (662), Expect = 2e-73
 Identities = 171/514 (33%), Positives = 263/514 (51%), Gaps = 29/514 (5%)

Query: 7   KLALALIAAGLSFGAMAADITV---AYDADPVSMDPHEQLSGGTLQLSHMVFDPLIRFTQ 63
           KL  A++ A ++ GA  A          +D  + D H Q +     +   V++ L+ +  
Sbjct: 2   KLPFAVLFAAMALGAGGAHAKTFKWTSASDIPTWDIHSQNNALANGIHASVYESLVYYNS 61

Query: 64  K-MEFEPRLAESWQRVDNETMRFTLRKGVKFHSGNDFTADDVVWTFNRLKESADFKGIF- 121
           K  + EP LA +W++V    +R  LR GVKFH G+ F+ADD V++  R        GI+ 
Sbjct: 62  KTFKPEPVLATAWKQVTPTQLRMNLRTGVKFHDGSAFSADDAVFSIERAMTKTSNFGIYA 121

Query: 122 EPLVSLTKVDDYTIEIKTAGTYPLIENVATYIFPMDSKFYTGTTADGKNKA---EIVKHG 178
           + +  + KVD  TI+I T    P++ N  T +  M   +     A+  N     +I    
Sbjct: 122 QGIDRVVKVDANTIDIFTKDPNPVLLNQLTELRMMSKAW-----AEKNNSTMPKDIKTQD 176

Query: 179 NSFASENISGTGPFTVTAREQGVKLEFQRNPNYWDKASKGNVDKLTLAVIKEDATRVAAL 238
            +FA  N +GTGPF +   +   KL   RNPN+W K S+GNV ++    +K  ATR+AAL
Sbjct: 177 ENFAHRNANGTGPFVLKEWQPDQKLVVTRNPNWWGK-SEGNVTEVIYTPVKAVATRMAAL 235

Query: 239 LSGGVDMIAPVSPNDYQRIKDAKGVDLFTMPGTRVITFQMNQ-----------NSNPALK 287
           LSG VD++   SP D  R++  + + +      R I F M+Q             NP LK
Sbjct: 236 LSGEVDLVLDPSPQDLARVRGEQNLKVIDGVENRTIFFGMDQFRDELPGSNIKGKNP-LK 294

Query: 288 DVRVRQAIVYAINNEGIVDKVMKGAATTAAQQSPVGYAGYNENLKPR--FDLNKAKELMK 345
           D RVR+A+  AI+   I    ++G              G+ E +  R  FD+  A++L+ 
Sbjct: 295 DQRVRKALYQAIDMNTIARVSLRGLGQPTGALVAPQVNGWTEAVHKRHPFDVAAAQKLLA 354

Query: 346 EAGYEKGFNLTMIAPNNRYVNDEKIAQAASAMLSKIGIKVDLKTMPKAQYWPEFDKCAAD 405
           +AGY+ GF +    PNNRY+NDE+I QA +AM ++IG+K  L+T+P   Y+P   +  A 
Sbjct: 355 DAGYKDGFEVDFACPNNRYINDEQICQAVTAMWARIGVKAKLRTLPLVTYFPMIQRYEAS 414

Query: 406 MLMIGWHPDTEDSANFTEFLTMTRDSNTGKGQYNCGYYSNAEVDKLVNAANEETDLEKRS 465
           + M+GW   T D+    + L  +  +  G G YN G YSN ++D LV    +ETDL+ R+
Sbjct: 415 IYMLGWGVPTFDALYSLQSLVRSVGAG-GDGNYNVGRYSNPQMDALVERTKKETDLKLRT 473

Query: 466 TMLKKVEEILYNEAAFVPLHFQDPSWAAKNTLDI 499
            +L K   +   + A +PLH Q   WA K  +++
Sbjct: 474 ELLTKALALQNEDVAHIPLHNQIIPWAMKKNIEV 507