Pairwise Alignments

Query, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 512 a.a., Dipeptide transport system, periplasmic component in protein degradation cluster from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  143 bits (361), Expect = 1e-38
 Identities = 124/493 (25%), Positives = 223/493 (45%), Gaps = 29/493 (5%)

Query: 3   TMKNKLALALIAAGLSFGAMAA-DITVAYDADPVSMDPHEQLSGGTLQLSHMVFDPLIRF 61
           T K   AL L ++  +F A+AA D+ VA  ++  ++DP++     +  ++   +  L   
Sbjct: 6   THKWLAALGLASSIAAFPALAAKDVVVAVGSNFTTLDPYDANDTLSQAVAKSFYQGLFGL 65

Query: 62  TQKMEFEPRLAESWQRVDNE-TMRFTLRKGVKFHSGNDFTADDVVWTFNRLKESADFK-- 118
            + M+ +  LAE +   D+  T   TLR+GVKF  G DF A  V    +R     +    
Sbjct: 66  DKDMKVKNVLAEGYTVSDDGLTYTITLRQGVKFQDGADFNAAAVKANLDRASNPDNHLKR 125

Query: 119 -GIFEPLVSLTKVDDYTIEIKTAGTYPLIENVATYIFPMDSKFYTGTTADGKNKAEIVKH 177
             +++ +     VD  T++I     +    N+  +            TA    +A + K+
Sbjct: 126 YNLYKNIAKTEVVDPATVKITLKQPFSAFINILAH----------PATAMISPQA-LEKY 174

Query: 178 GNSFASENISGTGPFTVTAREQGVKLEFQRNPNYWDKASKGNVDKLTLAVIKEDATRVAA 237
           G       + GTGP+ +    Q   ++ ++   YW +     +D +T   + ++ TR A 
Sbjct: 175 GKDIGFHPV-GTGPYQLETWNQTDFVKVKKFAGYWQQGLP-KLDSITWRPVTDNNTRAAM 232

Query: 238 LLSGGVDMIAPVSPNDYQRIKDAKGVDLFTMPGTRVITFQMNQNSNPALKDVRVRQAIVY 297
           L +G      P+       +   K ++L   P        MN    P   + +VR+A+ Y
Sbjct: 233 LQTGEAQFAFPIPYEQAALLAKNKNLELVASPSIMQRYISMNVTQKP-FDNPKVREALNY 291

Query: 298 AINNEGIVDKVMKGAATTAAQQSPVGYAGYNENLKP-RFDLNKAKELMKEAGYEKGFNLT 356
           AIN + +V     G AT A    P   A Y ++ +P  +D  KA+EL+KEAGY  GF+ T
Sbjct: 292 AINRQALVKVAFAGYATPATGVVPPSIA-YAQSYQPWPYDPAKARELLKEAGYPDGFSTT 350

Query: 357 MIAPNNRYVNDEKIAQAASAMLSKIGIKVDLKTMPKAQYWPEFD-----KCAADMLMIGW 411
           + + +N +   +K+ Q     L++IG+K  +  M   Q   E +     +    M   GW
Sbjct: 351 LWSSHN-HSTAQKVLQFTQQQLAQIGVKARITAMDAGQRAAEVEGKGQKESGVRMFYTGW 409

Query: 412 HPDTEDSANFTEFLTMTRDSNTGKGQYNCGYYSNAEVDKLVNAANEETDLEKRSTMLKKV 471
              T ++        +    N    Q+N  +YSN +VD  + AA +  D ++++ + K+ 
Sbjct: 410 SASTGEAD--WALSPLFASQNWPPTQFNTAFYSNKQVDSDLAAALKTNDPQEKTRLYKEA 467

Query: 472 EEILYNEAAFVPL 484
           ++I++ E+ ++PL
Sbjct: 468 QDIIWKESPWIPL 480