Pairwise Alignments

Query, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 526 a.a., Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  178 bits (451), Expect = 5e-49
 Identities = 150/505 (29%), Positives = 237/505 (46%), Gaps = 50/505 (9%)

Query: 7   KLALALIAAGLSFGAMAADITVAYDADPVSMDPHEQLSGGTLQLSHM-VFDPLIRF-TQK 64
           KL L+L+A  ++    A  +    +  P   +P    SG T   S + +++ L+ F T  
Sbjct: 3   KLGLSLVAMTVAASVQAKTLVYCSEGSPEGFNPQLFTSGTTYDASSVPIYNRLVEFKTGT 62

Query: 65  MEFEPRLAESWQ-RVDNETMRFTLRKGVKFHSGNDF------TADDVVWTFNRLKESAD- 116
            E  P LAE W    D +T  F LRKGVK+ S  DF       ADDVV++F+R K   + 
Sbjct: 63  TEVIPGLAEKWDISEDGKTYTFHLRKGVKWQSSKDFKPTRELNADDVVFSFDRQKNEQNP 122

Query: 117 -----------FKGIFEP--LVSLTKVDDYTIE-IKTAGTYPLIENVATYIFPMDSKFYT 162
                      F+G+  P  +  + KVDD+T++ + T    P + ++A     + SK Y 
Sbjct: 123 YHKVSGGSYEYFEGMGLPDLISEVKKVDDHTVQFVLTRPEAPFLADLAMDFASILSKEY- 181

Query: 163 GTTADGKNKAEIVKHGNSFASENISGTGPFTVTAREQGVKLEFQRNPNYWDKASKGNVDK 222
              AD   KA   +        N  GTGPF +   ++  ++ ++    YW   +K  +D+
Sbjct: 182 ---ADNMLKAGTPEK----VDLNPVGTGPFQLVQYQKDSRILYKAFDGYW--GTKPQIDR 232

Query: 223 LTLAVIKEDATRVAALLSGGVDMIAPVSPNDYQRIKDAKGVDLFTMPGTRVITFQMNQNS 282
           L  ++  + + R A L      ++   +P D  R+K+ K ++L    G  V     N   
Sbjct: 233 LVFSITPDASVRYAKLQKNECQVMPYPNPADIARMKEDKNINLMEQAGLNVGYLSYNVQK 292

Query: 283 NPALKDVRVRQAIVYAINNEGIVDKVMKGAATTAAQQSPVGYAGYNENLKP-RFDLNKAK 341
            P L DV+VRQA+ YA+N E I+  V +GA   A    P    GYN+++K   +D  KAK
Sbjct: 293 KP-LDDVKVRQALTYAVNKEAIIKAVYQGAGVAAKNLIPPTMWGYNDDIKDYGYDPEKAK 351

Query: 342 ELMKEAGYEKGFNLTMIA-PNNRYVND--EKIAQAASAMLSKIGIKVDLKTMPKAQYWPE 398
            L+KEAG EKGF + + A P  R  N    ++A+   A  +KIG++  + T      W E
Sbjct: 352 ALLKEAGLEKGFTIDLWAMPVQRPYNPNARRMAEMIQADWAKIGVQAKIVTYE----WGE 407

Query: 399 FDKCAAD----MLMIGWHPDTEDSANFTEFLTMTRDSNTGKGQYNCGYYSNAEVDKLVNA 454
           + K A D     +M+GW  D  D  NF  F T+       +G  N   +     + L+  
Sbjct: 408 YLKRAKDGEHQTVMMGWTGDNGDPDNF--FATLFSCDAAQQGS-NYSKWCYKPFEDLIQP 464

Query: 455 ANEETDLEKRSTMLKKVEEILYNEA 479
           A    D  KR  + K+ + +++++A
Sbjct: 465 ARATDDHNKRIELYKQAQVVMHDQA 489