Pairwise Alignments

Query, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 552 a.a., ABC-type dipeptide transport system, periplasmic component from Kangiella aquimarina DSM 16071

 Score =  142 bits (359), Expect = 2e-38
 Identities = 126/482 (26%), Positives = 222/482 (46%), Gaps = 43/482 (8%)

Query: 31  DADPVSMDPHEQLSGGTLQLS-HMVFDPLIRFTQ-KMEFEPRLAESWQRVDNETM-RFTL 87
           +  P + +P    SG +   + H +++ L+ +     +  P LAESW+  D+ T  RF L
Sbjct: 43  EGSPDAFNPQLVSSGTSYDATAHTIYNQLVTYNSGTTDIAPALAESWKISDDGTRYRFKL 102

Query: 88  RKGVKFHSGNDFT------ADDVVWTFNRLKESAD--------------FKGIFEPLVSL 127
           ++GV FH   DFT      ADDV+++FNR + S+                +G+ + ++ +
Sbjct: 103 KEGVNFHGNQDFTPTRTLNADDVIFSFNRQRLSSHPFHEVSGGRYPYFYSQGLDQLILDI 162

Query: 128 TKVDDYTIE-IKTAGTYPLIENVATYIFPMDSKFYTGTTADGKNKAEIVKHGNSFASENI 186
            KV D  +E + +    P +  +AT    + S  Y      G ++ E +       S+ I
Sbjct: 163 NKVSDKEVEFVLSRPESPFLAILATPFASILSAEYA-EVLQGLDRLEWID------SKPI 215

Query: 187 SGTGPFTVTAREQGVKLEFQRNPNYWDKASKGNVDKLTLAVIKEDATRVAALLSGGVDMI 246
            GTGPF     E    + ++   +Y+  A K  +  L  ++  + A R A   +G  D++
Sbjct: 216 -GTGPFRFKRYEPDSYIRYEAFEDYFGGAPK--IKDLVYSITPDAAMRFARFSAGECDIM 272

Query: 247 APVSPNDYQRIKDAKGVDLFTMPGTRVITFQMNQNSNPALKDVRVRQAIVYAINNEGIVD 306
           +   P  + RI     +++  +PG  V  +  N    P   DV+VRQA+  AIN E I+ 
Sbjct: 273 SNPLPV-HLRIARQNKLNILEIPGFNVAYWAFNVEK-PPFHDVKVRQALSMAINREAILK 330

Query: 307 KVMKGAATTAAQQSPVGYAGYNENL-KPRFDLNKAKELMKEAGYEKGFNLTMIA-PNNRY 364
            V    A  A    P     YN+ + + R++  +AK+L+ EAGYE GF + + A P  R 
Sbjct: 331 AVYDRQAQIATSPIPPSSWAYNKQVSRVRYNTQQAKQLLAEAGYENGFTIDIWAMPIQRT 390

Query: 365 VND--EKIAQAASAMLSKIGIKVDLKTMPKAQYWPEFDKCAADMLMIGWHPDTEDSANFT 422
            N    K+A+     L KIG+K  + +     +     +     +++GW+ D  D +NF 
Sbjct: 391 YNPNARKMAEMMQQDLEKIGVKARIISYEWGTFLARVAQGLHHSVLLGWNADNGDPSNFL 450

Query: 423 EFLTMTRDSNTGKGQYNCGYYSNAEVDKLVNAANEETDLEKRSTMLKKVEEILYNEAAFV 482
             L     + +G    N   + +   D+L+  A++ +D+EKR     + + +   EA ++
Sbjct: 451 NPLLSCASARSGN---NYAKWCHPTFDQLILNASQSSDIEKRKQYYLQAQALFKEEAPWL 507

Query: 483 PL 484
            +
Sbjct: 508 TI 509