Pairwise Alignments

Query, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 535 a.a., ABC-type dipeptide transport system, periplasmic component from Enterobacter asburiae PDN3

 Score =  171 bits (433), Expect = 6e-47
 Identities = 141/501 (28%), Positives = 228/501 (45%), Gaps = 42/501 (8%)

Query: 7   KLALALIAAGLSFGAMAADITVAYDADPVSMDPHEQLSGGTLQLSHM-VFDPLIRF-TQK 64
           KL L+L+A  ++    A  +    +  P   +P    SG T   S + +++ L+ F T  
Sbjct: 12  KLGLSLVAMTVAASVQAKTLVYCSEGSPEGFNPQLFTSGTTYDASSVPIYNRLVEFKTGT 71

Query: 65  MEFEPRLAESWQ-RVDNETMRFTLRKGVK------FHSGNDFTADDVVWTFNRLKESAD- 116
            E  P LAE W    D +T  F LR+GVK      F    DF ADDVV++F+R K + + 
Sbjct: 72  TEVIPGLAEKWDVSEDGKTYTFHLRQGVKWQDSKEFKPTRDFNADDVVFSFDRQKNAQNP 131

Query: 117 -----------FKGIFEP--LVSLTKVDDYTIE-IKTAGTYPLIENVATYIFPMDSKFYT 162
                      F+G+  P  +  + KVDD T++ + T    P + ++A     + SK Y 
Sbjct: 132 YHKVSGGSYEYFEGMGLPDLIAEVKKVDDKTVQFVLTRPEAPFLADLAMDFASILSKEY- 190

Query: 163 GTTADGKNKAEIVKHGNSFASENISGTGPFTVTAREQGVKLEFQRNPNYWDKASKGNVDK 222
              AD   KA   +        N  GTGPF +   ++  ++ ++    YW   +K  +D+
Sbjct: 191 ---ADNMLKAGTPEK----VDLNPIGTGPFQLLQYQKDSRILYKAFEGYW--GTKPQIDR 241

Query: 223 LTLAVIKEDATRVAALLSGGVDMIAPVSPNDYQRIKDAKGVDLFTMPGTRVITFQMNQNS 282
           L  ++  + + R A L      ++   +P D  R+K  K ++L    G  V     N   
Sbjct: 242 LVFSITPDASVRYAKLQKNECQVMPYPNPADIARMKQDKNINLLEQAGLNVGYLSFNTEK 301

Query: 283 NPALKDVRVRQAIVYAINNEGIVDKVMKGAATTAAQQSPVGYAGYNENLKP-RFDLNKAK 341
            P   DV+VRQA+ YA+N E I+  V +GA   A    P    GYN+++K   +D  KAK
Sbjct: 302 KP-FDDVKVRQALTYAVNKEAIIKAVYQGAGVAAKNLIPPTMWGYNDDVKDYTYDPEKAK 360

Query: 342 ELMKEAGYEKGFNLTMIA-PNNRYVND--EKIAQAASAMLSKIGIKVDLKTMPKAQYWPE 398
            L+KEAG +KGF + + A P  R  N    ++A+   A  +K+G++  + T    +Y   
Sbjct: 361 ALLKEAGQDKGFTVELWAMPVQRPYNPNARRMAEMVQADWAKVGVQAKIVTYEWGEYLKR 420

Query: 399 FDKCAADMLMIGWHPDTEDSANFTEFLTMTRDSNTGKGQYNCGYYSNAEVDKLVNAANEE 458
                   +M+GW  D  D  NF   L     +  G    N   +     + L+  A   
Sbjct: 421 AKAGEHQAVMMGWTGDNGDPDNFFATLFSCAAAKDGS---NYSRWCYKPFEDLIQPARAT 477

Query: 459 TDLEKRSTMLKKVEEILYNEA 479
            D  KR  + K+ + +++++A
Sbjct: 478 DDHNKRIELYKQAQVVMHDQA 498