Pairwise Alignments

Query, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 531 a.a., ABC-type dipeptide transport system, periplasmic component from Enterobacter asburiae PDN3

 Score =  163 bits (413), Expect = 1e-44
 Identities = 145/509 (28%), Positives = 231/509 (45%), Gaps = 48/509 (9%)

Query: 1   MKTMKNKLALALIAAGLSFGAMAADITVAYDADPVSMDPHEQLSGGTLQLSHM-VFDPLI 59
           MK+    LALAL A  +S    A  +    +  P + +P    SG ++  S + V++ L+
Sbjct: 1   MKSKLTTLALALAALTVSSTVAAKTLVYCSEGSPENFNPQLYTSGTSVDASAVPVYNRLV 60

Query: 60  RFTQ-KMEFEPRLAESWQRVDN-ETMRFTLRKGVKFHSGN------DFTADDVVWTFNRL 111
            F     E  P LAE W+  D+ +   F LRKGVKF S        DF ADDV+++F R 
Sbjct: 61  DFKPGTTELVPSLAERWEVSDDGKVYTFHLRKGVKFQSNKSFTPTRDFNADDVIFSFMRQ 120

Query: 112 K-----------------ESADFKGIFEPLVSLTKVDDYTIEIKTAGTY-PLIENVATYI 153
           K                 ES +F  +   +  + KVDD+T+    A    P + ++A Y 
Sbjct: 121 KDVNHPYHNVSNGSYSNFESLEFGSL---ITGIDKVDDHTVRFTLAHPEAPFVADLAWYF 177

Query: 154 FPMDSKFYTGTTADGKNKAEIVKHGNSFASENISGTGPFTVTAREQGVKLEFQRNPNYWD 213
             + S  Y    AD   KA   +  +    E I GTGPF +   ++  ++ F    +YW 
Sbjct: 178 ASILSAEY----ADAMLKAGTPEKVDM---EPI-GTGPFKLAQYQKDSRILFTAFADYWQ 229

Query: 214 KASKGNVDKLTLAVIKEDATRVAALLSGGVDMIAPVSPNDYQRIKDAKGVDLFTMPGTRV 273
             SK  +D+L  ++  + + R A +      ++   +P D  R+K  K ++L +  G   
Sbjct: 230 GKSK--LDRLVFSITPDASVRFAKIEKNECQVMPFPNPADLPRMKANKDINLMSKAGLNT 287

Query: 274 ITFQMNQNSNPALKDVRVRQAIVYAINNEGIVDKVMKGAATTAAQQSPVGYAGYNENLKP 333
                N    P L +V+VRQA+  AIN   I+D V  G  T A    P G  G +  LK 
Sbjct: 288 GFLAFN-TQKPPLDNVKVRQALAMAINKPAIIDAVFHGTGTAAKNLLPPGVWGADSELKD 346

Query: 334 -RFDLNKAKELMKEAGYEKGFNLTMIA-PNNRYVND--EKIAQAASAMLSKIGIKVDLKT 389
             +D  KAK L+KEAG+  G ++ + A P  R  N   +++A+   A  +KIG++  + T
Sbjct: 347 YDYDPEKAKALLKEAGFANGVSVELWAMPVQRPYNPNAKRMAEMIQADWAKIGVQTKIVT 406

Query: 390 MPKAQYWPEFDKCAADMLMIGWHPDTEDSANFTEFLTMTRDSNTGKGQYNCGYYSNAEVD 449
               +Y            ++GW   T D  NF   L     +N G    N   +     D
Sbjct: 407 YEWGEYLKRVKGGEHQAALMGWTTATGDPDNFFGPLFTCTSANGGS---NSAKWCYKPFD 463

Query: 450 KLVNAANEETDLEKRSTMLKKVEEILYNE 478
           K++  A   TD +KR  + K+ +++++++
Sbjct: 464 KIIAEAKSTTDRDKRVALYKEAQQMMHDQ 492