Pairwise Alignments

Query, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 532 a.a., ABC-type dipeptide transport system, periplasmic component from Enterobacter asburiae PDN3

 Score =  164 bits (416), Expect = 6e-45
 Identities = 154/543 (28%), Positives = 243/543 (44%), Gaps = 52/543 (9%)

Query: 1   MKTMKNKLALALIA---AGLSFGAMAADITVAYDADPVSMDPHEQLSGGTLQLSHMV-FD 56
           M T K  LALAL A   AG ++ A +  +    +A P S +P    SG +   S  V ++
Sbjct: 1   MSTGKTLLALALSALLPAGAAWAANSDTLIYCSEASPESFNPQIASSGPSFVASSQVLYN 60

Query: 57  PLIRFTQ-KMEFEPRLAESWQ-RVDNETMRFTLRKGVKFHSGN------DFTADDVVWTF 108
            LI F   K      LAESW    D +T  F LRKGVKF+S        DF ADDV+++ 
Sbjct: 61  RLINFDPVKNTPVSSLAESWTISPDGKTYTFALRKGVKFNSNKYFKPTRDFNADDVIFSV 120

Query: 109 NRLK--------------ESADFKGIFEPLVSLTKVDDYTIEIKTAGTYPLIENVATYIF 154
            R K              E  +  G+ + +  + KVDDY ++      + L E  A ++ 
Sbjct: 121 LRQKDPKHPYHNVSQGNYEYFNDVGLDKLIQDVKKVDDYHVQ------FTLSEPNAAFLA 174

Query: 155 PMDSKFYTGTTADGKNKAEIVKHGNSFASENIS----GTGPFTVTAREQGVKLEFQRNPN 210
                F +  +A+  +   ++K G     EN+     GTGP+ +   +    + +  NPN
Sbjct: 175 DWGMDFASILSAEYADA--MLKKGTP---ENVDTWPIGTGPYVLQQYKVDSLIRYVANPN 229

Query: 211 YWDKASKGNVDKLTLAVIKEDATRVAALLSGGVDMIAPVSPNDYQRIKDAKGVDLFTMPG 270
           YW+   +     L  ++     TR+A L +    +I   SP  +  IK+ K + L ++  
Sbjct: 230 YWE--GEVPTKHLIFSITPNVETRLAKLQTNECQIIPAPSPVQFDAIKNNKDLTLHSVDA 287

Query: 271 TRVITFQMNQNSNPALKDVRVRQAIVYAINNEGIVDKVMKGAATTAAQQSPVGYAGYNEN 330
             V     N    P   +V VRQA+ YA + + IV+ V  G+ T A    P    G+N++
Sbjct: 288 LNVGYLAFNTEKKP-FDNVLVRQALNYATDKKAIVNAVFMGSGTVAKSPIPPNMLGFNKD 346

Query: 331 LKP-RFDLNKAKELMKEAGYEKGFNLTMIA-PNNR--YVNDEKIAQAASAMLSKIGIKVD 386
           LK   +D  KAK L+K+AG EKG  +T+ + P  R    N  +IA+   +  +K+G+K  
Sbjct: 347 LKDYSYDPEKAKALLKQAGLEKGAEVTLWSMPVQRPYNPNSRRIAEMIQSDWAKVGVKAK 406

Query: 387 LKTMPKAQYWPEFDKCAADMLMIGWHPDTEDSANFTEFLTMTRDSNTGKGQYNCGYYSNA 446
           + +    +Y     K   D  + GW  D  D  NF + L       TG    N   + + 
Sbjct: 407 IVSYEWGEYLSGMRKGEHDSALFGWMSDNGDPDNFADVLLGCNSIKTGS---NAARWCDK 463

Query: 447 EVDKLVNAANEETDLEKRSTMLKKVEEILYNEAAFVPLHFQDPSWAAK-NTLDIAPIING 505
             D LV  A   +   +R+ +  + +EI Y +A ++ L      +A + N    +  + G
Sbjct: 464 GYDALVQKAKLTSSPAERAKLYGQAQEIFYQQAPWIALANGKTFYATRSNVTGYSVSLMG 523

Query: 506 MDF 508
            DF
Sbjct: 524 SDF 526