Pairwise Alignments

Query, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 538 a.a., ABC-type oligopeptide transport system, periplasmic component from Enterobacter asburiae PDN3

 Score =  141 bits (356), Expect = 5e-38
 Identities = 141/558 (25%), Positives = 231/558 (41%), Gaps = 61/558 (10%)

Query: 1   MKTMKNKLALALIAAGLSFGAMAADI---TVAYDA---------DPVSMDPHEQLSGGTL 48
           MK   ++L  AL   GLS  + AAD+   TV             +P S+DP + +    +
Sbjct: 1   MKHPVSRLCAALYLCGLSTLSYAADVPQGTVLAQKQELVRHIKDEPASLDPAKAVGLPEI 60

Query: 49  QLSHMVFDPLIRFTQKMEFEPRLAESWQRVDNETMRFTLRKGVKFHSGNDFTADDVVWTF 108
           Q+   +F+ L+   +K E  P +A  WQ  DN    FTLR   K+  G   TA D V+++
Sbjct: 61  QVIRDLFEGLVNQNEKGELTPGVATRWQSNDNRIWTFTLRDNAKWSDGTPVTAQDFVYSW 120

Query: 109 NRLKE-------------------SADFKGIFEP-LVSLTKVDDYTIEIKTAGTYPLIEN 148
            RL +                    A   G   P  + +T VD  T+ ++     P   N
Sbjct: 121 QRLVDPKTTSPFAWFAALAGINNAQAIIDGKAAPDTLGVTAVDARTLRVQLDKPLPWFSN 180

Query: 149 VATYIFPMDSKFYTGTTADGKNKAEIVKHGNSFASENISGTGPFTVTAREQGVKLEFQRN 208
           +       +  FY    A+ ++  E  + G       + G G + +  R    KL    N
Sbjct: 181 LTA-----NFAFYPVQKANVESGKEWTRPG------ALVGNGAYVLNDRVVNEKLVVVPN 229

Query: 209 PNYWDKASKGNVDKLTLAVIKEDATRVAALLSGGVDMIAPVSPNDYQR-IKDAKGVDLFT 267
            +YWD A K  + K+T   I ++++     L+G +D+      N YQ+ +KD  G  ++T
Sbjct: 230 THYWDNA-KTVLQKVTFIPINQESSATKRYLAGDIDITESFPKNMYQKLLKDIPG-QVYT 287

Query: 268 MPGTRVITFQMNQNSNPALKDVRVRQAIVYAINNEGIVDKVMKGAATTAAQQSPVGYAGY 327
            P      +  N    P   D RVR A+   I+   + +KV+      A   +P   AG+
Sbjct: 288 PPQLGTYYYAFNTQKGPT-ADARVRLALSMTIDRRIMAEKVLGTGEKPAWHFTPDVTAGF 346

Query: 328 NENLKP-----RFDLN-KAKELMKEAGYEKGFNLTMIAPNNRYVNDEKIAQAASAMLSK- 380
                P     + +LN +AK L++ AGY     L +    N   N +KIA A ++M  K 
Sbjct: 347 TPEPSPFEQMSQQELNAQAKTLLQAAGYGPQRPLKLTLLYNTSENHQKIAIAVASMWKKN 406

Query: 381 IGIKVDLKTMPKAQYWPEFDKCAADMLMIGWHPDTEDSANFTEFLTMTRDSNTGKGQYNC 440
           +G+ V L+      Y    +    D++   W  D  + + F   LT T   N  +     
Sbjct: 407 LGVDVKLQNQEWKTYIDSRNTGNFDVIRASWVGDYNEPSTFLSLLTSTHSGNISR----- 461

Query: 441 GYYSNAEVDKLVNAANEETDLEKRSTMLKKVEEILYNEAAFVPLHFQDPSWAAKNTLDIA 500
             ++    DK+++ A  ET  + R+T     E+IL  +A   P++        K  +   
Sbjct: 462 --FNEPAYDKIIHQATLETTAKARNTDYNMAEKILMEKAPIAPIYQYTNGRLIKPWVKGY 519

Query: 501 PIINGMDFPYFGDLVVKE 518
           PI N  D  Y   + +++
Sbjct: 520 PINNPEDVAYSRTMYIEK 537