Pairwise Alignments

Query, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 528 a.a., ABC transporter substrate-binding protein from Dickeya dianthicola ME23

 Score =  147 bits (372), Expect = 7e-40
 Identities = 141/511 (27%), Positives = 239/511 (46%), Gaps = 59/511 (11%)

Query: 4   MKNK-LALALIAAGLSFGAMAADITVA----------YDADPVSMDPHEQLSGGTLQLSH 52
           MKNK L  AL+ A   FGA++     A           + +P  +       G  ++++ 
Sbjct: 1   MKNKSLFAALLVAASLFGAISQAAETAPKRGGTLNFLVEPEPPVLTSLVNSGGSVIKVNA 60

Query: 53  MVFDPLIRFTQKMEFEPRLAESWQ-RVDNETMRFTLRKGVKFHSGNDFTADDVVWTFNRL 111
            V + L+ +   M+  P+LA SW    D +   F LR+GVK+H G DFT+ DV ++   +
Sbjct: 61  KVIEGLLNYDFNMKPIPQLATSWSVSPDGKQYTFHLRQGVKWHDGKDFTSADVAFSILTV 120

Query: 112 KE-SADFKGIFEPLVSLTKVDDYTIEIKTAGTYP-LIENVATYIFPMDSK-FYTGTTADG 168
           K+ ++  +G F  +  +   D YT  ++ +   P LI   +    P+  K  Y GT    
Sbjct: 121 KKYNSRGQGTFANVTEVKTPDPYTAIVELSQPAPYLISAFSANEAPIVPKHLYDGTDI-- 178

Query: 169 KNKAEIVKHGNSFASENISGTGPFTVTAREQGVKLEFQRNPNYWDKASKGNVDKLTLAVI 228
                     N + +  + GTGPF      +G  + ++RNPNYWD+  K  VD+L +  I
Sbjct: 179 --------RSNPYNTAPV-GTGPFIFKEWVRGSHIVYERNPNYWDQP-KPYVDRLVVKFI 228

Query: 229 KEDATRVAALLSGGVDM--IAPVSPNDYQRIKDAKGVDLFTM-----PGTRVITFQMNQN 281
            + ATR+ A  +G +D+   +PV  N+  R+K    + + T      P    I F ++  
Sbjct: 229 PDAATRLIAFETGALDLGSESPVPLNELDRVKKNPRLAIETGGYGYGPTQTRIEFNLD-- 286

Query: 282 SNPALKDVRVRQAIVYAINNEGIVDKVMKGAATTAAQQSPVGYAGYNENLKPR--FDLNK 339
            NP LK+++VRQAI ++IN + + + V  G A  +        A ++++      FDL K
Sbjct: 287 -NPYLKNLKVRQAIAHSINRDVLRNVVWYGYAVNSPTPITPELAPFHDSAPSPYPFDLKK 345

Query: 340 AKELMKEAGYEK---GFNLTMIAPNNRYVND-EKIAQAASAMLSKIGIKVDLKTMPKAQY 395
           A++L+ EAG+ +   G  L ++     Y +  +++A+   + L+K+GI+V +++   A Y
Sbjct: 346 AEQLLDEAGFPRQADGIRLRLVHDYMPYGDGFKRVAEYLRSALAKVGIEVTIRSQDFATY 405

Query: 396 WP--------EFDKCAADMLMIGWHPDTEDSANFTEFLTMTRDSNTGKGQYNCGYYSNAE 447
                     EF   +   L         D     + L  ++    G    N  +Y+N E
Sbjct: 406 VKRVYTDRDFEFTNHSISNLF--------DPTVGVQRLYWSQAFKPGVAFGNGSHYANPE 457

Query: 448 VDKLVNAANEETDLEKRSTMLKKVEEILYNE 478
           VDKL+  A  ETD  KR+   +  + I+  E
Sbjct: 458 VDKLLEQAAVETDPAKRAEEFRTFQRIVAQE 488



 Score = 28.1 bits (61), Expect = 8e-04
 Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 5/97 (5%)

Query: 409 IGWHPDTEDSANFTEFLTMTRDSNTGKGQYNCGYYSNAEVDKLVNAANEETDLEKRSTML 468
           + WH   + ++    F  +T      +GQ   G ++N    K  +      +L + +  L
Sbjct: 100 VKWHDGKDFTSADVAFSILTVKKYNSRGQ---GTFANVTEVKTPDPYTAIVELSQPAPYL 156

Query: 469 KKVEEILYNEAAFVPLHFQDPSWAAKNTLDIAPIING 505
             +     NEA  VP H  D +    N  + AP+  G
Sbjct: 157 --ISAFSANEAPIVPKHLYDGTDIRSNPYNTAPVGTG 191