Pairwise Alignments

Query, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 523 a.a., putative deoxycholate-binding periplasmic protein YgiS from Azospirillum sp. SherDot2

 Score =  160 bits (404), Expect = 1e-43
 Identities = 122/444 (27%), Positives = 214/444 (48%), Gaps = 31/444 (6%)

Query: 50  LSHMVFDPLIRFTQKMEFEPRLAESWQRVDNET-MRFTLRKGVKFHSGNDFTADDVVWTF 108
           ++ +++  L R    M+ EP LAESW      T   F LR G+ FH G+  TA DVV TF
Sbjct: 67  VAELLYSGLTRLAAGMKVEPDLAESWSPDQTLTEWTFVLRPGLTFHDGSPCTAADVVATF 126

Query: 109 NRL---KESADFKGIFEPLVSLTKVDDYTIEIKTAGTYPLIENVATYIFPMDSKFYTGTT 165
             +   K ++  +    P+  +T  D+ T+  +    Y  +     Y            T
Sbjct: 127 TAILDPKTASPGRTNVGPIKEVTAKDERTVLFRLTSPYADLPVALAY------------T 174

Query: 166 ADGKNKAEIVKHGNSFASENISGTGPFTVTAREQGVKLEFQRNPNYWDKASKGNVDKLTL 225
                 A++++      S    GTGPF + + E   K+  +RNP Y+D A +  +D++ +
Sbjct: 175 NARIVPAKVIETDLDSLSRGAVGTGPFKLVSFEPDRKIVVERNPAYYDPA-RPYLDRVEV 233

Query: 226 AVIKEDATRVAALLSGGVDMIAPVSPNDYQRIKDAKGVDLFTMPGTRVITFQMNQNSNPA 285
            V  +     +AL+SG +D++   +P +YQR++ A GV    +P  + +   M  +  P 
Sbjct: 234 LVYPDRTAEASALISGDIDLMLGTAPGEYQRLEKAAGVKALRVPSGQFLNVNMGCDQKP- 292

Query: 286 LKDVRVRQAIVYAINNEGIVDKVMKGAATTAAQQSPV--GYAGYNENLKPRFDLNKAKEL 343
             D RVR+A+  +++ E +V  V  G   T    +P+   Y  + E    + DL +AK+L
Sbjct: 293 FSDPRVRKALALSVDREAMVGFV-AGGYGTPGNDTPISPAYRFHREQPLRKADLAQAKKL 351

Query: 344 MKEAGYEKGFNLTMIAPNNRYVNDEKIAQAASAMLSKIGIKVDLKTMPKAQYWPEFDKCA 403
           + EAGY  G +LTMIA +      E +A A   M    G ++ ++TMP A Y  +  K  
Sbjct: 352 LAEAGYPNGVDLTMIASDKPGTRTE-LAVAIREMAKPAGFRIQVQTMPHATYLDQVWK-- 408

Query: 404 ADMLMIGWHPDTEDSANFTEFLTMTRDSNTGKGQYNCGYYSNAEVDKLVNAANEETDLEK 463
                +G++ + + +A+    L  T D+   + ++N     N + D LV  A  +TD  +
Sbjct: 409 KGNFYVGFY-NMQATADAVFSLLYTSDAAWNETRWN-----NKDFDALVAEARAKTDETE 462

Query: 464 RSTMLKKVEEILYNEA-AFVPLHF 486
           R+ +  K ++++++E  + +P+ F
Sbjct: 463 RAALYAKAQQLMHDEVPSVIPVFF 486