Pairwise Alignments

Query, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 536 a.a., putative D,D-dipeptide-binding periplasmic protein DdpA from Azospirillum sp. SherDot2

 Score =  160 bits (404), Expect = 1e-43
 Identities = 133/481 (27%), Positives = 213/481 (44%), Gaps = 32/481 (6%)

Query: 33  DPVSMDPHEQLSGGTLQLSHMVFDPLIRF--TQKMEFEPRLAESWQ-RVDNETMRFTLRK 89
           D VS+DP E       + S  V+D LI F      + E   AESW    D +T  F +R 
Sbjct: 45  DIVSLDPGEIFELSGAEYSAQVYDRLIHFDVNDVSKIEGEAAESWTVSPDGKTFTFKIRD 104

Query: 90  GVKFHSGNDFTADDVVWTFNRLKESADFKGIFEPLVSLT--KVDD-----------YTIE 136
           G+ FHSGN  TA+DV W+F+R  +             LT   VD            +T +
Sbjct: 105 GIAFHSGNPMTAEDVAWSFSRAVKMNKGPAFILTQFGLTPENVDQMVRATDPKTLVFTTD 164

Query: 137 IKTAGTYPLIENVATYIFPMDSKFYTGTTADGKNKAEIVKHGNSFASENISGTGPFTVTA 196
              A T+ L    A     +DSK   G   DG         G  +   N +G+GPF +  
Sbjct: 165 KVYAPTFVLYCLTADVASIVDSKLVKGKEKDGD-------FGAGWLKTNSAGSGPFILKQ 217

Query: 197 REQGVKLEFQRNPNYWDKASKGNVDKLTLAVIKEDATRVAALLSGGVDMIAPVSPNDYQR 256
            +    L F  NP YW  A K  + ++ +  I E AT+   L  G VD+   + P  ++ 
Sbjct: 218 WKASELLTFDANPKYWRGAPK--LKRVLIRHIPEPATQRLLLEKGDVDVARNLKPEQFEP 275

Query: 257 IKDAKGVDLFTMPGTRVITFQMNQNSNPALKDVRVRQAIVYAINNEGIVDKVMKGAATTA 316
           +K +  + L   P   +    +NQ  N  L    VR+A  Y ++ +G+   +M G     
Sbjct: 276 LKSSDAIRLVQAPKGTLWYLSLNQK-NATLAKPEVREAFKYLVDYDGMAGSIMNGIGAVH 334

Query: 317 AQQSPVGYAGYNENLKPRFDLNKAKELMKEAGYEKGFNLTMIAPNNRYVNDEKIAQAASA 376
               P G+ G   +   ++D  KAKEL+ +AGY +GF ++M   N     D  +AQA  A
Sbjct: 335 QAFLPKGFLGAVNDNPYKYDPAKAKELLAKAGYPEGFTVSMDVRNTNPTQD--MAQAIQA 392

Query: 377 MLSKIGIKVDLKTMPKAQYWPEFDKCAADMLMIGWHPDTED-SANFTEFLTMTRDSNTGK 435
             +K GIK+++      Q   ++     ++++  W  D +D ++N   F +   +S+  K
Sbjct: 393 SAAKAGIKIEIIPGDGKQVLTKYRARNHELMIQQWGADYQDPNSNADTFASNPDNSDNAK 452

Query: 436 GQYNC--GYYSNAEVDKLVNAANEETDLEKRSTMLKKVEEILYNEAAFVPLHFQDPSWAA 493
            +       +   E+ +   AA EE D  KR+ M ++++  +  ++ FV + FQ     A
Sbjct: 453 SKPLAWRNAWDIPELTRKTAAAIEERDGAKRAQMYEELQRSVLADSPFV-IMFQQTEMVA 511

Query: 494 K 494
           +
Sbjct: 512 E 512