Pairwise Alignments

Query, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 521 a.a., ABC transporter, substrate binding protein (agrocinopines A and B) from Agrobacterium fabrum C58

 Score =  145 bits (366), Expect = 3e-39
 Identities = 136/498 (27%), Positives = 222/498 (44%), Gaps = 62/498 (12%)

Query: 34  PVSMDPHEQLSGGTLQLSHMVFDPLIR--FTQK------MEFEPRLAESWQRVDNETMRF 85
           P S++P   +S    ++ + +FD LI   F  K      ++  P LAESW+R+D +++RF
Sbjct: 43  PNSLEPVNAISNVGPRIVNQIFDTLIARDFFAKGAPGNAIDLVPALAESWERIDEKSVRF 102

Query: 86  TLRKGVKFHSGNDFTADDVVWTFN--RLKESADFKGI----------FEPLVSLTKVDDY 133
            LR+ V FH G + TADDV +TF+  RL      K I           EP+V     D Y
Sbjct: 103 KLRQKVMFHDGVELTADDVAYTFSSERLWGPEAIKKIPLGKSYSLDFDEPVVE----DKY 158

Query: 134 TIEIKTAGTYPLIEN-VATYIFPMDSKFYTGTTADGKNKAEIVKHGNSFASENISGTGPF 192
           T+ ++T     LIE  VA+++  +  K Y         K   V  GN        GTGP+
Sbjct: 159 TVTLRTKTPSYLIETFVASWMSRIVPKEY-------YKKLGAVDFGNKPV-----GTGPY 206

Query: 193 TVTAREQGVKLEFQRNPNYWDKASKGNVDKLTLAVIKEDATRVAALLSGGVDMIAPVSPN 252
                  G ++  + N  YW    K    K+T  ++ E ATRVA L+SG  D+I  ++P+
Sbjct: 207 KFVEFVAGDRVVLEANDAYW--GPKPTASKITYQIVAEPATRVAGLISGEYDIITTLTPD 264

Query: 253 DYQRIKDAKGVDL--FTMPGTRVITFQMNQNSNPALKDVRVRQAIVYAINNEGIVDKVMK 310
           D Q I     ++     +    + TF MNQ      KD ++R+A+  A+N   +V+ + K
Sbjct: 265 DIQLINSYPDLETRGTLIENFHMFTFNMNQE---VFKDKKLRRALALAVNRPIMVEALWK 321

Query: 311 GAATTAAQQSPVGYAGYNENLKPR-----FDLNKAKELMKEAGYEKGFNLTMIAPNNRYV 365
             A+  A      +  Y E   P+     +++ +AK L+KE+GY+ G  +T     N Y 
Sbjct: 322 KQASIPA---GFNFPNYGETFDPKRKAMEYNVEEAKRLVKESGYD-GTPITYHTMGNYYA 377

Query: 366 NDEKIAQAASAMLSKIGIKVDLKTMPKAQYWPEFDKCAADMLMIGWHPDTEDSANFTEFL 425
           N          M  +IG+ V +KT     + P+      +     W  D         + 
Sbjct: 378 NAMPALMMMIEMWKQIGVNVVMKTYAPGSFPPDNQTWMRNWSNGQWMTDA--------YA 429

Query: 426 TMTRD-SNTGKGQYNCGYYSNAEVDKLVNAANEETDLEKRSTMLKKVEEILYNEAAFVPL 484
           T+  +    G+ Q   G+ + AE ++L        + ++R     ++ +I   EA  V L
Sbjct: 430 TIVPEFGPNGQVQKRWGWKAPAEFNELCQKVTVLPNGKERFDAYNRMRDIFEEEAPAVIL 489

Query: 485 HFQDPSWAAKNTLDIAPI 502
           +     +AA+  +   P+
Sbjct: 490 YQPYDVYAARKDVHWKPV 507