Pairwise Alignments

Query, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 521 a.a., oligopeptide ABC transporter substrate-binding protein from Agrobacterium fabrum C58

 Score =  226 bits (575), Expect = 2e-63
 Identities = 154/503 (30%), Positives = 249/503 (49%), Gaps = 18/503 (3%)

Query: 1   MKTMKNKLALALIAAGLSFGAMAADITVAYDADPVSMDPHEQLSGGTLQLSHMVFDPLIR 60
           M  +++ +  A+ AA ++  A A  +     AD  S+DP+   S   L   + +++ L+R
Sbjct: 1   MSRIRSFVLAAMAAAAIAVPAHAETLRWGGRADLYSLDPYSVPSTSNLAFLNHIYEGLVR 60

Query: 61  FTQKMEFEPRLAESWQRVDNETMRFTLRKGVKFHSGNDFTADDVVWTFNRLKE-SADFKG 119
           +    + EP LA  W+ +D +  RFTLRKGVKFH G+DFTADDVV +F R  + ++  +G
Sbjct: 61  YGPDFQIEPALATEWKLIDGKAWRFTLRKGVKFHDGSDFTADDVVASFTRASDATSPLRG 120

Query: 120 IFEPLVSLTKVDDYTIEIKTAGTYPLIENVATYIFPMDSKFYTGTTADGKNKAEIVKHGN 179
                  + KVDDYT++++ +    L  N  T IF  ++K+     ++     +     +
Sbjct: 121 NIPVFAGVKKVDDYTVDLEVSAPTSLFLNDITNIFIFNAKWLKDNNSE--KPTDFASKVD 178

Query: 180 SFASENISGTGPFTVTAREQGVKLEFQRNPNYWDKASKGNVDKLTLAVIKEDATRVAALL 239
            + + + +GTGPF + +R    K     N  +WD+  K N+D++    I   ATRVAALL
Sbjct: 179 GYTTMHTNGTGPFKLESRVPDSKTVLVANEGWWDQ-KKHNLDRIEFVPIASAATRVAALL 237

Query: 240 SGGVDMIAPVSPNDYQRIKDAKGVDLFTMPGTRVITFQMNQNS-------NPALKDVRVR 292
           SG +D+I      D  R++ +  + +      R +    N+         NP   D+RVR
Sbjct: 238 SGEIDLIDSAPIQDLPRLESSPNISVKKRTELRTLFIGFNRREKLEDGKPNP-FNDLRVR 296

Query: 293 QAIVYAINNEGIVDKVMKGAATTAAQQSPVGYAGYNENLK--PRFDLNKAKELMKEAGYE 350
           QA   +I+ + I  KVM+G A  +        AGY ++L      D  KA++L+ +AG  
Sbjct: 297 QAFEASIDRDLINKKVMRGLARPSGSLIAPEIAGYAKSLDTFEPADPAKAQKLLADAGM- 355

Query: 351 KGFNLTMIAPNNRYVNDEKIAQAASAMLSKIGIKVDLKTMPKAQYWPEFDKCAADMLMIG 410
           K    T    N+  VN+E I    + ML + G +  +   P++   P+ +   AD+  + 
Sbjct: 356 KNLAFTYTCMNDESVNEEDICSGVANMLKRGGFQPTIDIAPRSVQSPKRNGGKADVFNLS 415

Query: 411 W-HPDTEDSANFTEFLTMTRDSNTGKGQYNCGYYSNAEVDKLVNAANEETDLEKRSTMLK 469
           W +  T D+ +    +  TR    G   Y  G +SN E+DKLV  A +E D  KR  + +
Sbjct: 416 WANEPTLDAFSMLSQILSTRKGAMGVSNY--GGWSNPEIDKLVAQAAQEQDNTKRLALEE 473

Query: 470 KVEEILYNEAAFVPLHFQDPSWA 492
              +I  +E   VPLH Q  +WA
Sbjct: 474 AALKIAKDETMLVPLHQQPIAWA 496