Pairwise Alignments

Query, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 534 a.a., dipeptide ABC transporter substrate-binding protein from Agrobacterium fabrum C58

 Score =  182 bits (461), Expect = 3e-50
 Identities = 147/516 (28%), Positives = 241/516 (46%), Gaps = 47/516 (9%)

Query: 1   MKTMKNKLALA-LIAAGLSFGAMAADITVAYDADPVSMDPHEQLSGGTLQLS-HMVFDPL 58
           MKT+   L +A  +A   +  AMA       +A P   DP    +GGT   S H V++ L
Sbjct: 1   MKTLTRSLLIASALAMASAMPAMAKTFVYCSEASPEGFDPSPYTAGGTFDASAHPVYNRL 60

Query: 59  IRFTQ-KMEFEPRLAESWQRVDNETMRFT--LRKGVKFHSGN------DFTADDVVWTFN 109
             F +   E EP LAE W  V ++ + +T  LRKGVKFHS +      DF ADDV++++N
Sbjct: 61  TEFKKGTTEVEPGLAEKWD-VSSDGLEYTFHLRKGVKFHSNDKFTPSRDFNADDVIFSYN 119

Query: 110 RLKESAD-------------FKGIFEP--LVSLTKVDDYTIE-IKTAGTYPLIENVATYI 153
           R  ++ +             +  +  P  +  + KVDDYT++ + T    P + N+A   
Sbjct: 120 RQGDTKNPWNQYIAGITYEYYNSMEMPSLIKEIVKVDDYTVKFVLTRPEAPFLANIAMPF 179

Query: 154 FPMDSKFYTGTTADGKNKAEIVKHGNSFASENIS-GTGPFTVTAREQGVKLEFQRNPNYW 212
             + SK Y  T         + K G      N+  GTGPF   A ++   + +Q+N +YW
Sbjct: 180 ASIVSKEYADT---------LEKAGTKEDFNNLPIGTGPFKFVAYQKDAVIRYQKNADYW 230

Query: 213 DKASKGNVDKLTLAVIKEDATRVAALLSGGVDMIAPVSPNDYQRIKDAKGVDLFTMPGTR 272
             A K  +D L  A+  + A R+  L +G   ++   +P D   I+  K + L   PG  
Sbjct: 231 GDAPK--IDDLIFAITPDAAVRLQKLKAGECHLMPYPAPADLSTIRADKNLKLDEQPGLN 288

Query: 273 VITFQMNQNSNPALKDVRVRQAIVYAINNEGIVDKVMKGAATTAAQQSPVGYAGYNENLK 332
           V  F  N    P  K   VR+A+  A+N + I+D V +GA T A    P     YN+++K
Sbjct: 289 VAYFAYNTTVAPFDKP-EVRKALNMAMNKQAIIDAVFQGAGTVAKNPIPPTMWSYNDSIK 347

Query: 333 -PRFDLNKAKELMKEAGYEKGFNLTMIAPNNR--YVNDEKIAQAASAMLSKIGIKVDLKT 389
              +D   AK+ ++ AG +         P  R    N  + A+   +  +K+G+K ++ +
Sbjct: 348 DDAYDPEAAKKALEAAGVKDLTMKIWAMPVQRPYMPNARRTAELIQSDFAKVGVKAEIVS 407

Query: 390 MPKAQYWPEFDKCAAD-MLMIGWHPDTEDSANFTEFLTMTRDSNTGKGQYNCGYYSNAEV 448
               +Y  +  +   D  +++GW  D  D  NF   L     + TG+G  N   + N E 
Sbjct: 408 FEWGEYLKKSTEVNRDGAVILGWTGDNGDPDNFMGVLLSC--AATGEGGANRAQWCNKEF 465

Query: 449 DKLVNAANEETDLEKRSTMLKKVEEILYNEAAFVPL 484
            +L++ A + TD+ +R+ + ++ + I   +A +  L
Sbjct: 466 SELLSKAKQTTDVAERTKLYEQAQVIFKEQAPWATL 501