Pairwise Alignments

Query, 571 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 544 a.a., putative ABC transporter ATP-binding protein YejF from Xanthobacter sp. DMC5

 Score =  409 bits (1050), Expect = e-118
 Identities = 230/557 (41%), Positives = 335/557 (60%), Gaps = 35/557 (6%)

Query: 3   LLEVKNLRIEYPSRHGVHAA--VKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLS-P 59
           LL V++L + +    G   A  VK+++ ++ +GE + +VGESG+GKS    +V+ LL  P
Sbjct: 5   LLSVRDLSVAFRRGDGAPPALAVKTVSFELAKGETLALVGESGSGKSVTALSVLKLLPYP 64

Query: 60  PGTIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHAN 119
             +   GE+   G  +  +S + +R +RG+ I  +FQ+PM+SLNPL T+E Q+ E +  +
Sbjct: 65  SASHPSGEILFKGRDLLTVSERELRGIRGNNITMVFQEPMSSLNPLHTIERQVGEMLILH 124

Query: 120 MQVSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADE 179
             +SA  A  R L L+ +VGIPQPE RL  YPHQ SGG RQRV+IA+ALA EPDL+IADE
Sbjct: 125 RGMSAHAARARTLELLAEVGIPQPEERLSAYPHQLSGGQRQRVMIAMALANEPDLLIADE 184

Query: 180 PTTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTA 239
           PTTALDV++Q QIL L++EL  +  +  + +THD+G+V  + DRV VM +G++VE G   
Sbjct: 185 PTTALDVTVQAQILKLLKELQARLGMAMLFITHDLGIVRKIADRVCVMQKGEIVEQGGAE 244

Query: 240 KVLGTPEHPYTRSLISAVPRSDRKLDRFPLVSYIEEAKELKPLDVKSHWLGQSQDHRKYT 299
           +    P HPYT++L+ A P+ D      P    + EA +LK                   
Sbjct: 245 ETFQHPRHPYTQALLKAEPKPD-PAPIAPDAPLVMEANDLK------------------- 284

Query: 300 GPLLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVI 359
                     + F  K  +      +V+A + VS A+  GET G+VGESGSGK+T+   +
Sbjct: 285 ----------VYFPIKRGILRKTVGHVKAVDGVSIAIRRGETLGVVGESGSGKTTLGLAL 334

Query: 360 AGLYQPNAGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEPIR 419
             L   +AG + F G  + AL S    RPLR  +Q+VFQ+P+ +++PRM + +I+ E + 
Sbjct: 335 LRLIS-SAGPIAFLGKPIDAL-SFKAMRPLRSDLQIVFQDPFGALSPRMSVAEIVGEGLL 392

Query: 420 FHKLTRSESETRQIVNDLLEHVGLGKMAGLKYPHEFSGGQRQRISIARALATRPRLLICD 479
            H+   S  E    V   L  VGL      +YPHEFSGGQRQRISIARA+A  P  ++ D
Sbjct: 393 VHQRQLSADERDARVVAALADVGLDPETRHRYPHEFSGGQRQRISIARAMALEPSFVVLD 452

Query: 480 EPTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVAPT 539
           EPTSALD+ VQAQI++LL+ LQ + +LT +FISHDL V+  +  R+ VM+ G ++E  P 
Sbjct: 453 EPTSALDMIVQAQIVDLLRALQKKRDLTFMFISHDLRVVSALASRILVMRNGKMVEEGPA 512

Query: 540 EQLFTDPQHEYSKKLIS 556
             +F  P+ +Y++ L +
Sbjct: 513 HDVFEHPKEDYTRALFA 529



 Score =  181 bits (458), Expect = 9e-50
 Identities = 118/270 (43%), Positives = 159/270 (58%), Gaps = 15/270 (5%)

Query: 299 TGPLLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIA-R 357
           T PLL V ++++ F   D    +      A   VSF + +GET  LVGESGSGKS  A  
Sbjct: 2   TTPLLSVRDLSVAFRRGDGAPPAL-----AVKTVSFELAKGETLALVGESGSGKSVTALS 56

Query: 358 VIAGLYQPNA----GRVTFEGIDLTALKSEHERRPLR-RQMQMVFQNPYTSMNPRMKIFD 412
           V+  L  P+A    G + F+G DL  + SE E R +R   + MVFQ P +S+NP   I  
Sbjct: 57  VLKLLPYPSASHPSGEILFKGRDLLTV-SERELRGIRGNNITMVFQEPMSSLNPLHTIER 115

Query: 413 IIAEPIRFHKLTRSESETRQIVNDLLEHVGLGKMAGL--KYPHEFSGGQRQRISIARALA 470
            + E +  H+   S    R    +LL  VG+ +       YPH+ SGGQRQR+ IA ALA
Sbjct: 116 QVGEMLILHR-GMSAHAARARTLELLAEVGIPQPEERLSAYPHQLSGGQRQRVMIAMALA 174

Query: 471 TRPRLLICDEPTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQM 530
             P LLI DEPT+ALDV+VQAQIL LLK+LQ  L + MLFI+HDL ++R++ DRV VMQ 
Sbjct: 175 NEPDLLIADEPTTALDVTVQAQILKLLKELQARLGMAMLFITHDLGIVRKIADRVCVMQK 234

Query: 531 GTLLEVAPTEQLFTDPQHEYSKKLISLMPE 560
           G ++E    E+ F  P+H Y++ L+   P+
Sbjct: 235 GEIVEQGGAEETFQHPRHPYTQALLKAEPK 264



 Score =  180 bits (456), Expect = 1e-49
 Identities = 107/262 (40%), Positives = 166/262 (63%), Gaps = 16/262 (6%)

Query: 3   LLEVKNLRIEYPSRHGV------HA-AVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVID 55
           ++E  +L++ +P + G+      H  AV  +++ I+RGE +GVVGESG+GK+T+G A++ 
Sbjct: 277 VMEANDLKVYFPIKRGILRKTVGHVKAVDGVSIAIRRGETLGVVGESGSGKTTLGLALLR 336

Query: 56  LLSPPGTIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTET 115
           L+S  G IA       G+ I  LS +AMR +R S +  +FQDP  +L+P  +V   + E 
Sbjct: 337 LISSAGPIA-----FLGKPIDALSFKAMRPLR-SDLQIVFQDPFGALSPRMSVAEIVGEG 390

Query: 116 IHANM-QVSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDL 174
           +  +  Q+SA+E   R ++ +  VG+  PE R  +YPH+FSGG RQR+ IA A+A EP  
Sbjct: 391 LLVHQRQLSADERDARVVAALADVGL-DPETR-HRYPHEFSGGQRQRISIARAMALEPSF 448

Query: 175 IIADEPTTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVE 234
           ++ DEPT+ALD+ +Q QI++L+R L KK ++  M ++HD+ VVS +  R+ VM  G +VE
Sbjct: 449 VVLDEPTSALDMIVQAQIVDLLRALQKKRDLTFMFISHDLRVVSALASRILVMRNGKMVE 508

Query: 235 FGPTAKVLGTPEHPYTRSLISA 256
            GP   V   P+  YTR+L +A
Sbjct: 509 EGPAHDVFEHPKEDYTRALFAA 530