Pairwise Alignments

Query, 571 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 542 a.a., peptide ABC transporter ATP-binding protein from Pseudomonas simiae WCS417

 Score =  391 bits (1005), Expect = e-113
 Identities = 216/554 (38%), Positives = 330/554 (59%), Gaps = 37/554 (6%)

Query: 3   LLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPGT 62
           LL V++L+I     HG   AV  L+  I  GEIV +VGESG+GK+    A I LL  P  
Sbjct: 7   LLNVEHLKIRV-GEHGP-LAVDDLSFSIAPGEIVALVGESGSGKTMAARAAIGLLPLPMQ 64

Query: 63  IAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANMQV 122
           + GG +   G  ++ +S +A+R +RG+ IG +FQ+PM SLNP   +  Q++E +  +  +
Sbjct: 65  VCGGRLDFQGRDLASVSTEALRAIRGASIGMVFQEPMVSLNPALKIGQQMSEALKLHTDL 124

Query: 123 SAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEPTT 182
              +  +R L++++++GI   E  L+ YPHQFSGGMRQR+++A  +   P L+IADEPTT
Sbjct: 125 DPPQIRERCLTMLRRIGIKAAERCLESYPHQFSGGMRQRIMLASVMLLRPALLIADEPTT 184

Query: 183 ALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAKVL 242
           ALD   Q  ++ L+ EL ++     + ++HD+ +V+    +V VM  G  VE G    +L
Sbjct: 185 ALDCLAQLDVIELMLELTREQGTAILFISHDLSLVARYAHKVVVMRHGKAVEQGSIEDIL 244

Query: 243 GTPEHPYTRSLISAVPRSDRKLDRFPLVSYIEEAKELKPLDVKSHWLGQSQDHRKYTGPL 302
             P+  YTR L+ A+PR                   L PL V +              PL
Sbjct: 245 LAPKAEYTRQLLEALPRRG----------------VLAPLPVSNE-------------PL 275

Query: 303 LKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIAGL 362
           ++V+ V +      + F  +R++ +  ++ S  +  GET  LVG SGSGK+T+ R + GL
Sbjct: 276 VEVDQVCIEH-PGPTTFWGKRQHTRVVHSASLVIAPGETLALVGGSGSGKTTLGRSLVGL 334

Query: 363 YQPNAGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEPIRFHK 422
            +P AG + F+G+D+  LK+ +  R  R Q QM+FQ+PY+S+NPRMKI +I+AEP+R H+
Sbjct: 335 IKPCAGSIRFKGVDI--LKAAN--RTHRLQCQMIFQDPYSSLNPRMKIGEILAEPLR-HE 389

Query: 423 LTRSESETRQIVNDLLEHVGLGKMAGLKYPHEFSGGQRQRISIARALATRPRLLICDEPT 482
              + +E R+ V   L+ +GLG+    ++PH+ SGGQRQR++I RAL   P+L+I DEP 
Sbjct: 390 PGLNAAERRERVTQTLKDIGLGEQFVERFPHQLSGGQRQRVAIGRALVRHPQLVIADEPI 449

Query: 483 SALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVAPTEQL 542
           SALD+++Q QIL L + LQ +     LFISHDL  + ++  RV VM  G ++EV   EQ+
Sbjct: 450 SALDMTIQKQILELFERLQAQYGFACLFISHDLAAVERIAHRVAVMHQGNVVEVGAREQI 509

Query: 543 FTDPQHEYSKKLIS 556
           F  PQH Y+++L++
Sbjct: 510 FDHPQHPYTRQLLA 523



 Score =  163 bits (413), Expect = 1e-44
 Identities = 94/260 (36%), Positives = 143/260 (55%), Gaps = 16/260 (6%)

Query: 3   LLEVKNLRIEYPS------RHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDL 56
           L+EV  + IE+P       +      V S +L I  GE + +VG SG+GK+T+G +++ L
Sbjct: 275 LVEVDQVCIEHPGPTTFWGKRQHTRVVHSASLVIAPGETLALVGGSGSGKTTLGRSLVGL 334

Query: 57  LSPPGTIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETI 116
           + P      G +   G  I     +A       +   IFQDP +SLNP   +   L E +
Sbjct: 335 IKP----CAGSIRFKGVDIL----KAANRTHRLQCQMIFQDPYSSLNPRMKIGEILAEPL 386

Query: 117 HANMQVSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLII 176
                ++A E  +R    +K +G+   E  ++++PHQ SGG RQRV I  AL   P L+I
Sbjct: 387 RHEPGLNAAERRERVTQTLKDIGLG--EQFVERFPHQLSGGQRQRVAIGRALVRHPQLVI 444

Query: 177 ADEPTTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFG 236
           ADEP +ALD++IQ QIL L   L  +    C+ ++HD+  V  +  RVAVM++G++VE G
Sbjct: 445 ADEPISALDMTIQKQILELFERLQAQYGFACLFISHDLAAVERIAHRVAVMHQGNVVEVG 504

Query: 237 PTAKVLGTPEHPYTRSLISA 256
              ++   P+HPYTR L++A
Sbjct: 505 AREQIFDHPQHPYTRQLLAA 524



 Score =  153 bits (387), Expect = 1e-41
 Identities = 94/264 (35%), Positives = 143/264 (54%), Gaps = 16/264 (6%)

Query: 302 LLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIAG 361
           LL VE++ +R      L         A +++SF++  GE   LVGESGSGK+  AR   G
Sbjct: 7   LLNVEHLKIRVGEHGPL---------AVDDLSFSIAPGEIVALVGESGSGKTMAARAAIG 57

Query: 362 LY----QPNAGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEP 417
           L     Q   GR+ F+G DL ++ +E  R      + MVFQ P  S+NP +KI   ++E 
Sbjct: 58  LLPLPMQVCGGRLDFQGRDLASVSTEALRAIRGASIGMVFQEPMVSLNPALKIGQQMSEA 117

Query: 418 IRFHKLTRSESETRQIVNDLLEHVGL--GKMAGLKYPHEFSGGQRQRISIARALATRPRL 475
           ++ H       + R+    +L  +G+   +     YPH+FSGG RQRI +A  +  RP L
Sbjct: 118 LKLHT-DLDPPQIRERCLTMLRRIGIKAAERCLESYPHQFSGGMRQRIMLASVMLLRPAL 176

Query: 476 LICDEPTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLE 535
           LI DEPT+ALD   Q  ++ L+ +L  E    +LFISHDL ++ +   +V VM+ G  +E
Sbjct: 177 LIADEPTTALDCLAQLDVIELMLELTREQGTAILFISHDLSLVARYAHKVVVMRHGKAVE 236

Query: 536 VAPTEQLFTDPQHEYSKKLISLMP 559
               E +   P+ EY+++L+  +P
Sbjct: 237 QGSIEDILLAPKAEYTRQLLEALP 260