Pairwise Alignments

Query, 571 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 577 a.a., ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) / ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  444 bits (1141), Expect = e-129
 Identities = 252/569 (44%), Positives = 359/569 (63%), Gaps = 24/569 (4%)

Query: 3   LLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPGT 62
           LL+V+ L + +   +G   AV+ L L +QRGE + +VGESG GKST   A++ LL+P G 
Sbjct: 13  LLDVRGLDVFFLGSNGPVQAVRGLDLTLQRGETLALVGESGCGKSTTALALLRLLAP-GA 71

Query: 63  IAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANMQV 122
           +  G +  +G  I  LSP  +REVRG +I  IFQ+PMTSLNP+ T+  Q+ ET+  + ++
Sbjct: 72  VLRGSIQFDGRDILALSPAQLREVRGREISMIFQEPMTSLNPVHTIGTQIEETLRRHEKL 131

Query: 123 SAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEPTT 182
           SA  A +RA+ L+  V IP+P  R+  +PH  SGG RQRV+IA+A+A +P L++ADEPTT
Sbjct: 132 SALAARKRAIELLDLVRIPEPHQRIDDHPHNLSGGQRQRVMIAMAVACKPRLLVADEPTT 191

Query: 183 ALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAKVL 242
           ALDV+IQ QIL L+  L ++ ++  +L+THD+G+V+   DRVAVMY G+ VE   T+++ 
Sbjct: 192 ALDVTIQAQILELLDGLRRELDMALLLITHDLGLVAQWADRVAVMYGGEKVEEASTSRLF 251

Query: 243 GTPEHPYTRSLISAVPRSDRKLDRFPLVSYIE-EAKELKP-LDVKSHWLGQSQDHRKYTG 300
             P H YTR L+ A       L     + Y++    E++  LD  +   G+         
Sbjct: 252 AAPSHAYTRGLLGA------SLHAGSALHYVDARLPEIQTRLDAAT---GERSFALHVPE 302

Query: 301 PLLKVENVNLRFVTKDSLF---ESRREY-------VQASNNVSFAVHEGETFGLVGESGS 350
           P  KV  + +R    + L    + R +Y       + A + VSF +  GET GLVGESG 
Sbjct: 303 PNSKVRALPVRTAAAEPLLSVQDLRTDYPKRGGGVLHAVDGVSFDIRAGETVGLVGESGC 362

Query: 351 GKSTIARVIAGLYQPNAGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKI 410
           GKST++R +  L  P +GR+ F+G D+  L SE   +P RR++QMVFQ+PY S+NPR  +
Sbjct: 363 GKSTLSRTLLRLVNPASGRIVFDGTDIAQL-SEKALKPWRRRVQMVFQDPYASLNPRRSV 421

Query: 411 FDIIAEPIRFHKLTRSESETRQIVNDLLEHVGLGKMAGLKYPHEFSGGQRQRISIARALA 470
           FDII   ++ H +    +E R  +  +LE VGL   AG ++P+EFSGGQRQRI IARAL 
Sbjct: 422 FDIIESVLKVHGVA-DRAERRNRIAAILERVGLPADAGRRFPNEFSGGQRQRIGIARALV 480

Query: 471 TRPRLLICDEPTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQM 530
            RP L++ DEP SALDVSVQAQILNLL +L+++  L+ LFISHDL V+R + DRV VM  
Sbjct: 481 LRPSLVVLDEPVSALDVSVQAQILNLLVELKEDFGLSYLFISHDLSVVRYIADRVMVMSK 540

Query: 531 GTLLEVAPTEQLFTDPQHEYSKKLISLMP 559
           G ++E      ++  PQH Y++ LI+ +P
Sbjct: 541 GQIVETGSHRDIWDRPQHPYTRSLIAAVP 569



 Score =  193 bits (490), Expect = 2e-53
 Identities = 107/262 (40%), Positives = 164/262 (62%), Gaps = 8/262 (3%)

Query: 3   LLEVKNLRIEYPSRHG-VHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPG 61
           LL V++LR +YP R G V  AV  ++ DI+ GE VG+VGESG GKST+   ++ L++P  
Sbjct: 320 LLSVQDLRTDYPKRGGGVLHAVDGVSFDIRAGETVGLVGESGCGKSTLSRTLLRLVNP-- 377

Query: 62  TIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANMQ 121
             A G +  +G  I+ LS +A++  R  ++  +FQDP  SLNP  +V   +   +  +  
Sbjct: 378 --ASGRIVFDGTDIAQLSEKALKPWR-RRVQMVFQDPYASLNPRRSVFDIIESVLKVHGV 434

Query: 122 VSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEPT 181
               E   R  +++++VG+P    R  ++P++FSGG RQR+ IA AL   P L++ DEP 
Sbjct: 435 ADRAERRNRIAAILERVGLPADAGR--RFPNEFSGGQRQRIGIARALVLRPSLVVLDEPV 492

Query: 182 TALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAKV 241
           +ALDVS+Q QILNL+ EL +   +  + ++HD+ VV  + DRV VM +G +VE G    +
Sbjct: 493 SALDVSVQAQILNLLVELKEDFGLSYLFISHDLSVVRYIADRVMVMSKGQIVETGSHRDI 552

Query: 242 LGTPEHPYTRSLISAVPRSDRK 263
              P+HPYTRSLI+AVP ++++
Sbjct: 553 WDRPQHPYTRSLIAAVPGAEQR 574