Pairwise Alignments

Query, 571 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 545 a.a., ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) / ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  399 bits (1025), Expect = e-115
 Identities = 234/562 (41%), Positives = 336/562 (59%), Gaps = 37/562 (6%)

Query: 2   SLLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPG 61
           ++LEV+ LR+  PS      A+  L L I+ G  + +VGESG+GKS +   V+ LLS   
Sbjct: 9   AILEVRGLRVALPSDADRPHAIAQLDLRIEAGRTLCIVGESGSGKSVLATTVMGLLSKGL 68

Query: 62  TIAGGEVYLNGEKISG----LSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIH 117
            + GG+V L+GEK+       S + +R++RG+ +G +FQ+PMT+LNP+ T   Q+ E + 
Sbjct: 69  VLEGGDVILSGEKLVDNGRFTSDKRLRQLRGTGMGMVFQEPMTALNPVLTCGEQVDELLR 128

Query: 118 ANMQVSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIA 177
            +    A E     LS+ ++V +P P      YPHQ SGG RQR+VIA+A+  +P L+I 
Sbjct: 129 THTAWGAAERKAHILSIFERVRLPDPARIHASYPHQLSGGQRQRIVIAMAIILKPRLLIC 188

Query: 178 DEPTTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGP 237
           DEPTTALDV+ Q +IL LI EL  +     + +THDMGVV+ + D V VM+RG LVE GP
Sbjct: 189 DEPTTALDVTTQAEILKLIAELQAEQGSAVLFITHDMGVVAEIADDVMVMHRGALVEQGP 248

Query: 238 TAKVLGTPEHPYTRSLISAVPRSDRKLDRFPLVSYIEEAKELKPLDVKSHWLGQSQDHRK 297
             +VL +P   YTR L+ AVP                 A+EL                  
Sbjct: 249 CDQVLRSPREAYTRMLLDAVPGMTP-----------PPARELPG---------------- 281

Query: 298 YTGPLLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIAR 357
              PLL  + V   +  +D L   R ++  A  + S AVH GET G+VGESGSGKST AR
Sbjct: 282 -GRPLLAGQGVGKIYTRRDWL--GRAKHNTALQDASVAVHRGETVGVVGESGSGKSTFAR 338

Query: 358 VIAGLYQPNAGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEP 417
            +  L  P+AG + +   ++  L  E   RPLR ++Q+VFQ+P  S+NPR  +   + E 
Sbjct: 339 CMIRLISPSAGSILWGDAEVRDL-PEGRLRPLRSRVQVVFQDPNRSLNPRRTVGSSMVEG 397

Query: 418 IRFHKLTRSESETRQIVNDLLEHVGLGKMAGLKYPHEFSGGQRQRISIARALATRPRLLI 477
                L  S+   RQ   +L++ + L + A  +YPH+FSGGQRQR++IARA+A +P++L+
Sbjct: 398 AMNFGL--SKLHARQTAEELMDRIQLPRTALDRYPHQFSGGQRQRLAIARAIACQPQVLV 455

Query: 478 CDEPTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVA 537
            DE  SALDVSVQAQIL+LL+++Q +L L +LFI+HDL V  Q+CDRV VM  G ++E  
Sbjct: 456 ADEAVSALDVSVQAQILDLLREIQRDLGLGILFITHDLRVAAQLCDRVIVMSQGRIVEQG 515

Query: 538 PTEQLFTDPQHEYSKKLISLMP 559
           PT Q+F  P ++Y+++L++  P
Sbjct: 516 PTGQVFAAPANDYTRRLLAAAP 537



 Score =  182 bits (462), Expect = 3e-50
 Identities = 103/252 (40%), Positives = 156/252 (61%), Gaps = 8/252 (3%)

Query: 10  RIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPGTIAGGEVY 69
           R ++  R   + A++  ++ + RGE VGVVGESG+GKST    +I L+SP    + G + 
Sbjct: 297 RRDWLGRAKHNTALQDASVAVHRGETVGVVGESGSGKSTFARCMIRLISP----SAGSIL 352

Query: 70  LNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANMQVSAEEAYQ 129
               ++  L    +R +R S++  +FQDP  SLNP  TV   + E    N  +S   A Q
Sbjct: 353 WGDAEVRDLPEGRLRPLR-SRVQVVFQDPNRSLNPRRTVGSSMVEGA-MNFGLSKLHARQ 410

Query: 130 RALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEPTTALDVSIQ 189
            A  LM ++ +P+    L +YPHQFSGG RQR+ IA A+A +P +++ADE  +ALDVS+Q
Sbjct: 411 TAEELMDRIQLPR--TALDRYPHQFSGGQRQRLAIARAIACQPQVLVADEAVSALDVSVQ 468

Query: 190 DQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAKVLGTPEHPY 249
            QIL+L+RE+ +   +G + +THD+ V + + DRV VM +G +VE GPT +V   P + Y
Sbjct: 469 AQILDLLREIQRDLGLGILFITHDLRVAAQLCDRVIVMSQGRIVEQGPTGQVFAAPANDY 528

Query: 250 TRSLISAVPRSD 261
           TR L++A PR++
Sbjct: 529 TRRLLAAAPRAE 540



 Score =  157 bits (398), Expect = 8e-43
 Identities = 95/237 (40%), Positives = 134/237 (56%), Gaps = 11/237 (4%)

Query: 336 VHEGETFGLVGESGSGKSTIARVIAGLYQPN----AGRVTFEG---IDLTALKSEHERRP 388
           +  G T  +VGESGSGKS +A  + GL         G V   G   +D     S+   R 
Sbjct: 37  IEAGRTLCIVGESGSGKSVLATTVMGLLSKGLVLEGGDVILSGEKLVDNGRFTSDKRLRQ 96

Query: 389 LRRQ-MQMVFQNPYTSMNPRMKIFDIIAEPIRFHKLTRSESETRQIVNDLLEHVGLGKMA 447
           LR   M MVFQ P T++NP +   + + E +R H    +      I++ + E V L   A
Sbjct: 97  LRGTGMGMVFQEPMTALNPVLTCGEQVDELLRTHTAWGAAERKAHILS-IFERVRLPDPA 155

Query: 448 GL--KYPHEFSGGQRQRISIARALATRPRLLICDEPTSALDVSVQAQILNLLKDLQDELN 505
            +   YPH+ SGGQRQRI IA A+  +PRLLICDEPT+ALDV+ QA+IL L+ +LQ E  
Sbjct: 156 RIHASYPHQLSGGQRQRIVIAMAIILKPRLLICDEPTTALDVTTQAEILKLIAELQAEQG 215

Query: 506 LTMLFISHDLPVIRQMCDRVGVMQMGTLLEVAPTEQLFTDPQHEYSKKLISLMPEFT 562
             +LFI+HD+ V+ ++ D V VM  G L+E  P +Q+   P+  Y++ L+  +P  T
Sbjct: 216 SAVLFITHDMGVVAEIADDVMVMHRGALVEQGPCDQVLRSPREAYTRMLLDAVPGMT 272