Pairwise Alignments

Query, 571 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., dipeptide ABC transporter ATP-binding protein from Paraburkholderia sabiae LMG 24235

 Score =  443 bits (1140), Expect = e-129
 Identities = 254/568 (44%), Positives = 353/568 (62%), Gaps = 20/568 (3%)

Query: 3   LLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPG- 61
           ++++ ++ + +        AV+ L+L + RGE + +VGESG+GKS    A++ L+   G 
Sbjct: 19  VVDIDSMTVAFRRGETTFNAVRDLSLTVDRGETLAIVGESGSGKSVTSLALMRLVEHGGG 78

Query: 62  TIAGGEVYLNGEKISGL-----SPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETI 116
            IA G +       S L     S   MR VRG+ I  IFQ+PMTSLNP+FTV  Q+ E I
Sbjct: 79  KIANGSIAFRRRNGSVLDLVQASQATMRSVRGADIAMIFQEPMTSLNPVFTVGDQIGEAI 138

Query: 117 HANMQVSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLII 176
             +   S  EA+   L L+  V IP+      +YPHQ SGGMRQRV+IA+AL+ +P L+I
Sbjct: 139 ALHQNKSRSEAHAETLRLLDLVRIPEARRVAARYPHQLSGGMRQRVMIAMALSCKPSLLI 198

Query: 177 ADEPTTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFG 236
           ADEPTTALDV+IQ QIL LIR L  + N+G + +THDMGVV+ V DRV VMYRGD VE G
Sbjct: 199 ADEPTTALDVTIQAQILQLIRGLQDEMNMGVIFITHDMGVVAEVADRVLVMYRGDKVEEG 258

Query: 237 PTAKVLGTPEHPYTRSLISAVPR--SDRKLD---RFPLVSYIEEAKELKPLDVKSHWLGQ 291
            +A++   P HPYT++L++AVP+  S +  D   +F L++   E  +  P         Q
Sbjct: 259 ESAQLFAAPAHPYTKALLAAVPKLGSMQGTDAPAKFSLLTLDGEQAKAAP-------EAQ 311

Query: 292 SQDHRKYTGPLLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSG 351
           +Q   +   P+L+V ++  RF  +  LF      V A   VSF +H GET  LVGESG G
Sbjct: 312 AQTQTQAAQPVLRVRDLVTRFPVRSGLFSKLTGRVHAVERVSFDLHAGETLALVGESGCG 371

Query: 352 KSTIARVIAGLYQPNAGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIF 411
           KST  R +  L +  +G + F+G D+++L S    + LRR +Q +FQ+P+ S+NPR+ + 
Sbjct: 372 KSTTGRSLLRLVESQSGSIEFDGKDISSL-SGPSLQALRRDIQFIFQDPFASLNPRLTVG 430

Query: 412 DIIAEPIRFHKLTRSESETRQIVNDLLEHVGLGKMAGLKYPHEFSGGQRQRISIARALAT 471
             I EP+  H +  S  E +  V  LL+ VGL   A  +YPHEFSGGQRQRI+IARALA 
Sbjct: 431 FSIMEPLLVHNVA-SGKEAQARVAWLLDKVGLPADAARRYPHEFSGGQRQRIAIARALAL 489

Query: 472 RPRLLICDEPTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMG 531
            P+++I DE  SALDVSVQAQI+NL+ DLQ EL +  LFISHD+ V+ ++  RV VM +G
Sbjct: 490 NPKVVIADESVSALDVSVQAQIVNLMLDLQRELGVAYLFISHDMAVVERISHRVAVMYLG 549

Query: 532 TLLEVAPTEQLFTDPQHEYSKKLISLMP 559
            ++E+ P   +F  PQH Y+KKL+  +P
Sbjct: 550 QIVEIGPRRAVFESPQHPYTKKLMGAVP 577



 Score =  199 bits (506), Expect = 3e-55
 Identities = 111/266 (41%), Positives = 164/266 (61%), Gaps = 14/266 (5%)

Query: 3   LLEVKNLRIEYPSRHGVHA-------AVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVID 55
           +L V++L   +P R G+ +       AV+ ++ D+  GE + +VGESG GKST G +++ 
Sbjct: 322 VLRVRDLVTRFPVRSGLFSKLTGRVHAVERVSFDLHAGETLALVGESGCGKSTTGRSLLR 381

Query: 56  LLSPPGTIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTET 115
           L+        G +  +G+ IS LS  +++ +R   I FIFQDP  SLNP  TV   + E 
Sbjct: 382 LVESQS----GSIEFDGKDISSLSGPSLQALRRD-IQFIFQDPFASLNPRLTVGFSIMEP 436

Query: 116 IHANMQVSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLI 175
           +  +   S +EA  R   L+ +VG+P    R  +YPH+FSGG RQR+ IA ALA  P ++
Sbjct: 437 LLVHNVASGKEAQARVAWLLDKVGLPADAAR--RYPHEFSGGQRQRIAIARALALNPKVV 494

Query: 176 IADEPTTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEF 235
           IADE  +ALDVS+Q QI+NL+ +L ++  V  + ++HDM VV  ++ RVAVMY G +VE 
Sbjct: 495 IADESVSALDVSVQAQIVNLMLDLQRELGVAYLFISHDMAVVERISHRVAVMYLGQIVEI 554

Query: 236 GPTAKVLGTPEHPYTRSLISAVPRSD 261
           GP   V  +P+HPYT+ L+ AVP +D
Sbjct: 555 GPRRAVFESPQHPYTKKLMGAVPVAD 580



 Score =  172 bits (436), Expect = 4e-47
 Identities = 103/276 (37%), Positives = 150/276 (54%), Gaps = 16/276 (5%)

Query: 311 RFVTKDSL---FESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIAGLYQPNA 367
           R V  DS+   F        A  ++S  V  GET  +VGESGSGKS  +  +  L +   
Sbjct: 18  RVVDIDSMTVAFRRGETTFNAVRDLSLTVDRGETLAIVGESGSGKSVTSLALMRLVEHGG 77

Query: 368 GRVTFEGI----------DLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEP 417
           G++    I          DL        R      + M+FQ P TS+NP   + D I E 
Sbjct: 78  GKIANGSIAFRRRNGSVLDLVQASQATMRSVRGADIAMIFQEPMTSLNPVFTVGDQIGEA 137

Query: 418 IRFHKLTRSESETRQIVNDLLEHVGL--GKMAGLKYPHEFSGGQRQRISIARALATRPRL 475
           I  H+  +S SE       LL+ V +   +    +YPH+ SGG RQR+ IA AL+ +P L
Sbjct: 138 IALHQ-NKSRSEAHAETLRLLDLVRIPEARRVAARYPHQLSGGMRQRVMIAMALSCKPSL 196

Query: 476 LICDEPTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLE 535
           LI DEPT+ALDV++QAQIL L++ LQDE+N+ ++FI+HD+ V+ ++ DRV VM  G  +E
Sbjct: 197 LIADEPTTALDVTIQAQILQLIRGLQDEMNMGVIFITHDMGVVAEVADRVLVMYRGDKVE 256

Query: 536 VAPTEQLFTDPQHEYSKKLISLMPEFTGLRESTTAA 571
              + QLF  P H Y+K L++ +P+   ++ +   A
Sbjct: 257 EGESAQLFAAPAHPYTKALLAAVPKLGSMQGTDAPA 292