Pairwise Alignments

Query, 571 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 533 a.a., ABC transporter ATP-binding protein from Magnetospirillum magneticum AMB-1

 Score =  409 bits (1050), Expect = e-118
 Identities = 227/555 (40%), Positives = 337/555 (60%), Gaps = 37/555 (6%)

Query: 3   LLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLS-PPG 61
           LL V +L + +    G   AVK ++  + +GE + +VGESG+GKS    +++ LL  P  
Sbjct: 7   LLVVDDLAVSF----GPVQAVKGVSFTLAKGETLALVGESGSGKSVTALSILQLLPYPRA 62

Query: 62  TIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANMQ 121
           T   G + L+G ++ G    A+R+VRG +I  +FQ+PMTSLNPL ++E Q+ E +  ++ 
Sbjct: 63  THPRGSIRLDGAELVGAPEPALRKVRGGRIAMVFQEPMTSLNPLHSIEAQVGEVLELHLG 122

Query: 122 VSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEPT 181
           +       R + L+  VGIP+PE RL   PH+ SGG RQRV+IA+ALAGEPD++IADEPT
Sbjct: 123 LRGSTLRDRVVELLSLVGIPEPEKRLGALPHELSGGQRQRVMIAMALAGEPDILIADEPT 182

Query: 182 TALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAKV 241
           TALDV+IQ QIL L++ L  +  +  + +THD+G+V  + DRV VM  G++VE GP  +V
Sbjct: 183 TALDVTIQAQILALLKGLQARLGMALLFITHDLGIVRKMADRVCVMNAGEIVESGPLPQV 242

Query: 242 LGTPEHPYTRSLISAVPRSDRKLDRFPLVSYIEEAKELKPLDVKSHWLGQSQDHRKYTGP 301
              P HPYT+ L++A P+                         K H  G+ +        
Sbjct: 243 FDAPAHPYTQRLLAAEPKG------------------------KPHRAGEGEP------V 272

Query: 302 LLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIAG 361
           ++   ++ + F  K  L+     +V+A + +S  +  G T G+VGESGSGK+T+   +  
Sbjct: 273 VMAARDLKVWFPLKAGLWRKTVGHVKAVDGISLDLKRGHTIGVVGESGSGKTTLGLALLR 332

Query: 362 LYQPNAGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEPIRFH 421
           L   + G ++F G  + ++ S    RPLRRQMQMVFQ+PY S++PRM +  I+ E +  H
Sbjct: 333 LLDSD-GEISFGGTRIESM-SAGTLRPLRRQMQMVFQDPYGSLSPRMSVGQIVGEGLEVH 390

Query: 422 KLTRSESETRQIVNDLLEHVGLGKMAGLKYPHEFSGGQRQRISIARALATRPRLLICDEP 481
           +     +E  +++   LE VGL      +YPHEFSGGQRQRI+IARAL  +P+ ++ DEP
Sbjct: 391 EPAMHAAERDRLIAAALEEVGLDPATRDRYPHEFSGGQRQRIAIARALVLKPKFIVLDEP 450

Query: 482 TSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVAPTEQ 541
           TSALDVSVQAQI++LL+DLQ    L  LFISHDL V+R + D + VM+ G ++E    ++
Sbjct: 451 TSALDVSVQAQIVDLLRDLQARHALAYLFISHDLRVVRALADDLLVMKDGKVVEAGRADE 510

Query: 542 LFTDPQHEYSKKLIS 556
           LF  P+  Y++ L++
Sbjct: 511 LFKAPRTAYTRALMA 525



 Score =  176 bits (446), Expect = 2e-48
 Identities = 110/243 (45%), Positives = 143/243 (58%), Gaps = 10/243 (4%)

Query: 326 VQASNNVSFAVHEGETFGLVGESGSGKSTIARVIAGLYQ-PNA----GRVTFEGIDLTAL 380
           VQA   VSF + +GET  LVGESGSGKS  A  I  L   P A    G +  +G +L   
Sbjct: 20  VQAVKGVSFTLAKGETLALVGESGSGKSVTALSILQLLPYPRATHPRGSIRLDGAELVGA 79

Query: 381 KSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEPIRFHKLTRSESETRQIVNDLLEH 440
                R+    ++ MVFQ P TS+NP   I   + E +  H   R  S  R  V +LL  
Sbjct: 80  PEPALRKVRGGRIAMVFQEPMTSLNPLHSIEAQVGEVLELHLGLRG-STLRDRVVELLSL 138

Query: 441 VGLG---KMAGLKYPHEFSGGQRQRISIARALATRPRLLICDEPTSALDVSVQAQILNLL 497
           VG+    K  G   PHE SGGQRQR+ IA ALA  P +LI DEPT+ALDV++QAQIL LL
Sbjct: 139 VGIPEPEKRLGA-LPHELSGGQRQRVMIAMALAGEPDILIADEPTTALDVTIQAQILALL 197

Query: 498 KDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVAPTEQLFTDPQHEYSKKLISL 557
           K LQ  L + +LFI+HDL ++R+M DRV VM  G ++E  P  Q+F  P H Y+++L++ 
Sbjct: 198 KGLQARLGMALLFITHDLGIVRKMADRVCVMNAGEIVESGPLPQVFDAPAHPYTQRLLAA 257

Query: 558 MPE 560
            P+
Sbjct: 258 EPK 260



 Score =  157 bits (397), Expect = 1e-42
 Identities = 93/262 (35%), Positives = 159/262 (60%), Gaps = 16/262 (6%)

Query: 3   LLEVKNLRIEYPSRHGVHA-------AVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVID 55
           ++  ++L++ +P + G+         AV  ++LD++RG  +GVVGESG+GK+T+G A++ 
Sbjct: 273 VMAARDLKVWFPLKAGLWRKTVGHVKAVDGISLDLKRGHTIGVVGESGSGKTTLGLALLR 332

Query: 56  LLSPPGTIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTET 115
           LL      + GE+   G +I  +S   +R +R  ++  +FQDP  SL+P  +V   + E 
Sbjct: 333 LLD-----SDGEISFGGTRIESMSAGTLRPLR-RQMQMVFQDPYGSLSPRMSVGQIVGEG 386

Query: 116 IHANMQ-VSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDL 174
           +  +   + A E  +   + +++VG+  P  R  +YPH+FSGG RQR+ IA AL  +P  
Sbjct: 387 LEVHEPAMHAAERDRLIAAALEEVGL-DPATR-DRYPHEFSGGQRQRIAIARALVLKPKF 444

Query: 175 IIADEPTTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVE 234
           I+ DEPT+ALDVS+Q QI++L+R+L  ++ +  + ++HD+ VV  + D + VM  G +VE
Sbjct: 445 IVLDEPTSALDVSVQAQIVDLLRDLQARHALAYLFISHDLRVVRALADDLLVMKDGKVVE 504

Query: 235 FGPTAKVLGTPEHPYTRSLISA 256
            G   ++   P   YTR+L++A
Sbjct: 505 AGRADELFKAPRTAYTRALMAA 526