Pairwise Alignments

Query, 571 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 529 a.a., fused predicted oligopeptide transporter subunits of ABC superfamilly: ATP-binding components (NCBI) from Escherichia coli BW25113

 Score =  406 bits (1044), Expect = e-118
 Identities = 232/557 (41%), Positives = 335/557 (60%), Gaps = 33/557 (5%)

Query: 2   SLLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLL-SPP 60
           +LL ++NL + +  +  V   V  ++L I+ GE + +VGESG+GKS    +++ LL SPP
Sbjct: 4   TLLAIENLSVGFRHQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPP 63

Query: 61  GTIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANM 120
                G++  +GE +   S Q +R VRG+KI  IFQ+PM SLNPL T+E QL E +  + 
Sbjct: 64  VEYLSGDIRFHGESLLHASDQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR 123

Query: 121 QVSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEP 180
            +  E A    L+ + +VGI Q   RL  YPHQ SGG RQRV+IA+AL   P+L+IADEP
Sbjct: 124 GMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEP 183

Query: 181 TTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAK 240
           TTALDVS+Q QIL L+REL  + N+G + +TH++ +V  +  RVAVM  G  VE    A 
Sbjct: 184 TTALDVSVQAQILQLLRELQGELNMGMLFITHNLSIVRKLAHRVAVMQNGRCVEQNYAAT 243

Query: 241 VLGTPEHPYTRSLISAVPRSDRKLDRFPLVSYIEEAKELKPLDVKSHWLGQSQDHRKYTG 300
           +  +P HPYT+ L+++ P  D      P+           PL              +   
Sbjct: 244 LFASPTHPYTQKLLNSEPSGD------PV-----------PLP-------------EPAS 273

Query: 301 PLLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIA 360
            LL VE + + F  +  + +   ++     N+SF +  GET GLVGESGSGKST    + 
Sbjct: 274 TLLDVEQLQVAFPIRKGILKRIVDHNVVVKNISFTLRAGETLGLVGESGSGKSTTGLALL 333

Query: 361 GLYQPNAGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEPIRF 420
            L   + G + F+G  L  L +  +  P+R ++Q+VFQ+P +S+NPR+ +  II E +R 
Sbjct: 334 RLIN-SQGSIIFDGQPLQNL-NRRQLLPIRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRV 391

Query: 421 HKLTRSESETRQIVNDLLEHVGLGKMAGLKYPHEFSGGQRQRISIARALATRPRLLICDE 480
           H+ T S ++  Q V  ++  VGL      +YP EFSGGQRQRI+IARAL  +P L+I DE
Sbjct: 392 HQPTLSAAQREQQVIAVMHEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDE 451

Query: 481 PTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVAPTE 540
           PTS+LD +VQAQIL LLK LQ +  L  LFISHDL V+R +C +V +++ G ++E  P  
Sbjct: 452 PTSSLDKTVQAQILTLLKSLQQKHQLAYLFISHDLHVVRALCHQVIILRQGEVVEQGPCA 511

Query: 541 QLFTDPQHEYSKKLISL 557
           ++F  PQ EY+++L++L
Sbjct: 512 RVFATPQQEYTRQLLAL 528



 Score =  179 bits (455), Expect = 2e-49
 Identities = 112/268 (41%), Positives = 156/268 (58%), Gaps = 15/268 (5%)

Query: 299 TGPLLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARV 358
           T  LL +EN+++ F  + ++    R  V   N+VS  +  GET  LVGESGSGKS  A  
Sbjct: 2   TQTLLAIENLSVGFRHQQTV----RTVV---NDVSLQIEAGETLALVGESGSGKSVTALS 54

Query: 359 IAGLYQPN-----AGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDI 413
           I  L         +G + F G  L     +  R     ++ M+FQ P  S+NP   +   
Sbjct: 55  ILRLLPSPPVEYLSGDIRFHGESLLHASDQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQ 114

Query: 414 IAEPIRFHKLTRSESETRQIVNDLLEHVGLGKMAG--LKYPHEFSGGQRQRISIARALAT 471
           + E +  H+  R E+   +I+N  L+ VG+ + A     YPH+ SGG+RQR+ IA AL T
Sbjct: 115 LYEVLSLHRGMRREAARGEILN-CLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLT 173

Query: 472 RPRLLICDEPTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMG 531
           RP LLI DEPT+ALDVSVQAQIL LL++LQ ELN+ MLFI+H+L ++R++  RV VMQ G
Sbjct: 174 RPELLIADEPTTALDVSVQAQILQLLRELQGELNMGMLFITHNLSIVRKLAHRVAVMQNG 233

Query: 532 TLLEVAPTEQLFTDPQHEYSKKLISLMP 559
             +E      LF  P H Y++KL++  P
Sbjct: 234 RCVEQNYAATLFASPTHPYTQKLLNSEP 261