Pairwise Alignments

Query, 571 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 623 a.a., fused predicted peptide transport subunits of ABC superfamily: ATP-binding components (RefSeq) from Escherichia coli BW25113

 Score =  452 bits (1163), Expect = e-131
 Identities = 254/569 (44%), Positives = 358/569 (62%), Gaps = 22/569 (3%)

Query: 2   SLLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPG 61
           ++L V+NL I +       AAV++L+  +QRGE + +VGESG+GKS    A++ LL   G
Sbjct: 11  NVLAVENLNIAFMQDQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAG 70

Query: 62  TIAGGEVYL---NGEKISGLSPQ---AMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTET 115
            +   +  L      ++  LS Q    MR VRG+ +  IFQ+PMTSLNP+FTV  Q+ E+
Sbjct: 71  GLVQCDKMLLQRRSREVIELSEQNAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAES 130

Query: 116 IHANMQVSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLI 175
           I  +   S EEA   A  ++ QV IP+ +  L +YPHQ SGGMRQRV+IA+AL+  P ++
Sbjct: 131 IRLHQNASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVL 190

Query: 176 IADEPTTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEF 235
           IADEPTTALDV+IQ QIL LI+ L K+ ++G + +THDMGVV+ + DRV VMY+G+ VE 
Sbjct: 191 IADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVET 250

Query: 236 GPTAKVLGTPEHPYTRSLISAVPR--SDRKLD---RFPLVSYIEEAKELKPLDVKSHWLG 290
           G   ++   P+HPYTR+L++AVP+  + + LD   RFPL+S    AK+  P++ K+   G
Sbjct: 251 GTVEQIFHAPQHPYTRALLAAVPQLGAMKGLDYPRRFPLISLEHPAKQAPPIEQKTVVDG 310

Query: 291 QSQDHRKYTGPLLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGS 350
           +         P+L+V N+  RF  +  L       V A   VSF +  GET  LVGESGS
Sbjct: 311 E---------PVLRVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGS 361

Query: 351 GKSTIARVIAGLYQPNAGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKI 410
           GKST  R +  L +   G + F G  +  L S  + + LRR +Q +FQ+PY S++PR  I
Sbjct: 362 GKSTTGRALLRLVESQGGEIIFNGQRIDTL-SPGKLQALRRDIQFIFQDPYASLDPRQTI 420

Query: 411 FDIIAEPIRFHKLTRSESETRQIVNDLLEHVGLGKMAGLKYPHEFSGGQRQRISIARALA 470
            D I EP+R H L   +    ++   LLE VGL      +YPHEFSGGQRQRI IARALA
Sbjct: 421 GDSIIEPLRVHGLLPGKDAAARVA-WLLERVGLLPEHAWRYPHEFSGGQRQRICIARALA 479

Query: 471 TRPRLLICDEPTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQM 530
             P+++I DE  SALDVS++ QI+NLL DLQ +  +  LFISHD+ V+ ++  RV VM +
Sbjct: 480 LNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYL 539

Query: 531 GTLLEVAPTEQLFTDPQHEYSKKLISLMP 559
           G ++E+ P   +F +PQH Y++KL++ +P
Sbjct: 540 GQIVEIGPRRAVFENPQHPYTRKLLAAVP 568



 Score =  199 bits (507), Expect = 2e-55
 Identities = 115/272 (42%), Positives = 169/272 (62%), Gaps = 16/272 (5%)

Query: 3   LLEVKNLRIEYPSRHG--------VHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVI 54
           +L V+NL   +P R G        VHA V+ ++ D+  GE + +VGESG+GKST G A++
Sbjct: 313 VLRVRNLVTRFPLRSGLLNRVTREVHA-VEKVSFDLWPGETLSLVGESGSGKSTTGRALL 371

Query: 55  DLLSPPGTIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTE 114
            L+   G    GE+  NG++I  LSP  ++ +R   I FIFQDP  SL+P  T+   + E
Sbjct: 372 RLVESQG----GEIIFNGQRIDTLSPGKLQALRRD-IQFIFQDPYASLDPRQTIGDSIIE 426

Query: 115 TIHANMQVSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDL 174
            +  +  +  ++A  R   L+++VG+  PE+  + YPH+FSGG RQR+ IA ALA  P +
Sbjct: 427 PLRVHGLLPGKDAAARVAWLLERVGL-LPEHAWR-YPHEFSGGQRQRICIARALALNPKV 484

Query: 175 IIADEPTTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVE 234
           IIADE  +ALDVSI+ QI+NL+ +L +   +  + ++HDM VV  ++ RVAVMY G +VE
Sbjct: 485 IIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVE 544

Query: 235 FGPTAKVLGTPEHPYTRSLISAVPRSDRKLDR 266
            GP   V   P+HPYTR L++AVP ++    R
Sbjct: 545 IGPRRAVFENPQHPYTRKLLAAVPVAEPSRQR 576



 Score =  185 bits (470), Expect = 4e-51
 Identities = 106/278 (38%), Positives = 162/278 (58%), Gaps = 20/278 (7%)

Query: 300 GPLLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVI 359
           G +L VEN+N+ F+         ++ + A  N+SF++  GET  +VGESGSGKS  A  +
Sbjct: 10  GNVLAVENLNIAFMQD-------QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALAL 62

Query: 360 AGLYQPNAGRV----------TFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMK 409
             L +   G V          + E I+L+   +   R      M M+FQ P TS+NP   
Sbjct: 63  MRLLEQAGGLVQCDKMLLQRRSREVIELSEQNAAQMRHVRGADMAMIFQEPMTSLNPVFT 122

Query: 410 IFDIIAEPIRFHKLTRSESETRQIVNDLLEHVGLGKMAGL--KYPHEFSGGQRQRISIAR 467
           + + IAE IR H+   S  E       +L+ V + +   +  +YPH+ SGG RQR+ IA 
Sbjct: 123 VGEQIAESIRLHQ-NASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAM 181

Query: 468 ALATRPRLLICDEPTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGV 527
           AL+ RP +LI DEPT+ALDV++QAQIL L+K LQ E+++ ++FI+HD+ V+ ++ DRV V
Sbjct: 182 ALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLV 241

Query: 528 MQMGTLLEVAPTEQLFTDPQHEYSKKLISLMPEFTGLR 565
           M  G  +E    EQ+F  PQH Y++ L++ +P+   ++
Sbjct: 242 MYQGEAVETGTVEQIFHAPQHPYTRALLAAVPQLGAMK 279