Pairwise Alignments
Query, 571 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056
Subject, 555 a.a., oligopeptide ABC transporter ATPase from Agrobacterium fabrum C58
Score = 448 bits (1153), Expect = e-130
Identities = 240/556 (43%), Positives = 353/556 (63%), Gaps = 33/556 (5%)
Query: 2 SLLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPG 61
++++ +N+ + + HG AVK ++ + RGE + +VGESG+GKS ++ LL+
Sbjct: 24 AIIDARNIAVTFKVEHGTVEAVKDISFQLYRGETIAIVGESGSGKSVTARTIMGLLTKRA 83
Query: 62 TIA-GGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANM 120
+++ V NG+ I S + R +RG++I IFQ+PM+SLNP++T+ Q+ E I +
Sbjct: 84 SVSKSATVRFNGDDILRFSSRQRRALRGNRISMIFQEPMSSLNPIYTIGSQIVEAIRVHS 143
Query: 121 QVSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEP 180
++S +EA RAL L++QV IP+PE RLKQYPHQ SGG RQRV+IA+AL+ +PD++IADEP
Sbjct: 144 RLSRKEAEARALDLLRQVQIPEPEARLKQYPHQLSGGQRQRVMIAMALSNDPDVLIADEP 203
Query: 181 TTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAK 240
TTALDV++Q QILNLIR+L KK + +L+THD+ +V +D V VM G++ E T +
Sbjct: 204 TTALDVTVQAQILNLIRDLQKKRGMAVVLITHDLTIVKQFSDYVYVMQHGEMREHNTTER 263
Query: 241 VLGTPEHPYTRSLISAVPRSDRKLDRFPLVSYIEEAKELKPLDVKSHWLGQSQDHRKYTG 300
+ P+HPYT+ L+++ PR K PL S G
Sbjct: 264 LFAAPQHPYTKRLLASEPRGTAK-----------------PLPENS-------------G 293
Query: 301 PLLKVENVNLRFVTK-DSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVI 359
LL V + F+ + LF+ + + A +++ + ET GLVGESGSGK+T + +
Sbjct: 294 VLLTASGVRVSFMMRYGGLFKPELKELIAVDSLGLTLKRHETLGLVGESGSGKTTFGQSL 353
Query: 360 AGLYQPNAGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEPIR 419
L +P G V F+G + +S E RPLR +MQ+VFQ+P+ S+NPRM I II E +
Sbjct: 354 LRLNEPVGGEVIFDGERVDG-RSRSEMRPLRSRMQIVFQDPFASLNPRMTIGQIIEEGLI 412
Query: 420 FHKLTRSESETRQIVNDLLEHVGLGKMAGLKYPHEFSGGQRQRISIARALATRPRLLICD 479
+ L R+++E + V D LE G+ ++PHEFSGGQRQRI+IARA+A P ++ D
Sbjct: 413 INGLGRTKAERLERVRDALEAAGMPGNILSRFPHEFSGGQRQRIAIARAVALEPEFILLD 472
Query: 480 EPTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVAPT 539
EPTSALD+SVQAQI++LL+ LQDE L+ LFISHDL V+R +C RV VMQ G ++E P
Sbjct: 473 EPTSALDLSVQAQIIDLLRKLQDERGLSYLFISHDLKVVRALCHRVIVMQGGRIVEEGPV 532
Query: 540 EQLFTDPQHEYSKKLI 555
E + T+P+ EY+++L+
Sbjct: 533 EDVLTNPKTEYTQRLV 548
Score = 193 bits (491), Expect = 1e-53
Identities = 114/252 (45%), Positives = 155/252 (61%), Gaps = 10/252 (3%)
Query: 319 FESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIAGLYQPNAG-----RVTFE 373
F+ V+A ++SF ++ GET +VGESGSGKS AR I GL A V F
Sbjct: 35 FKVEHGTVEAVKDISFQLYRGETIAIVGESGSGKSVTARTIMGLLTKRASVSKSATVRFN 94
Query: 374 GIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEPIRFH-KLTRSESETRQ 432
G D+ S R ++ M+FQ P +S+NP I I E IR H +L+R E+E R
Sbjct: 95 GDDILRFSSRQRRALRGNRISMIFQEPMSSLNPIYTIGSQIVEAIRVHSRLSRKEAEARA 154
Query: 433 IVNDLLEHVGLGKM-AGLK-YPHEFSGGQRQRISIARALATRPRLLICDEPTSALDVSVQ 490
+ DLL V + + A LK YPH+ SGGQRQR+ IA AL+ P +LI DEPT+ALDV+VQ
Sbjct: 155 L--DLLRQVQIPEPEARLKQYPHQLSGGQRQRVMIAMALSNDPDVLIADEPTTALDVTVQ 212
Query: 491 AQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVAPTEQLFTDPQHEY 550
AQILNL++DLQ + + ++ I+HDL +++Q D V VMQ G + E TE+LF PQH Y
Sbjct: 213 AQILNLIRDLQKKRGMAVVLITHDLTIVKQFSDYVYVMQHGEMREHNTTERLFAAPQHPY 272
Query: 551 SKKLISLMPEFT 562
+K+L++ P T
Sbjct: 273 TKRLLASEPRGT 284
Score = 175 bits (444), Expect = 4e-48
Identities = 103/263 (39%), Positives = 157/263 (59%), Gaps = 16/263 (6%)
Query: 3 LLEVKNLRIEYPSRHG--------VHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVI 54
LL +R+ + R+G AV SL L ++R E +G+VGESG+GK+T G +++
Sbjct: 295 LLTASGVRVSFMMRYGGLFKPELKELIAVDSLGLTLKRHETLGLVGESGSGKTTFGQSLL 354
Query: 55 DLLSPPGTIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTE 114
L P GGEV +GE++ G S MR +R S++ +FQDP SLNP T+ + E
Sbjct: 355 RLNEP----VGGEVIFDGERVDGRSRSEMRPLR-SRMQIVFQDPFASLNPRMTIGQIIEE 409
Query: 115 TIHAN-MQVSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPD 173
+ N + + E +R ++ G+P N L ++PH+FSGG RQR+ IA A+A EP+
Sbjct: 410 GLIINGLGRTKAERLERVRDALEAAGMPG--NILSRFPHEFSGGQRQRIAIARAVALEPE 467
Query: 174 LIIADEPTTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLV 233
I+ DEPT+ALD+S+Q QI++L+R+L + + + ++HD+ VV + RV VM G +V
Sbjct: 468 FILLDEPTSALDLSVQAQIIDLLRKLQDERGLSYLFISHDLKVVRALCHRVIVMQGGRIV 527
Query: 234 EFGPTAKVLGTPEHPYTRSLISA 256
E GP VL P+ YT+ L+ A
Sbjct: 528 EEGPVEDVLTNPKTEYTQRLVRA 550