Pairwise Alignments

Query, 571 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 606 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  447 bits (1150), Expect = e-130
 Identities = 246/561 (43%), Positives = 353/561 (62%), Gaps = 11/561 (1%)

Query: 2   SLLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPG 61
           +LL V+ L +E+    G    V  ++  ++ G  V VVGESG+GKS    + + L    G
Sbjct: 8   ALLSVEGLSVEF----GDSRVVDDISFRVEPGRTVAVVGESGSGKSVTSLSTMRLADMMG 63

Query: 62  -TIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANM 120
            T   G++   G+ +   S + MR +RG +I  IFQ+PMTSLNP+FT+  Q+ E +  + 
Sbjct: 64  ATYPTGKILFEGKDLLKASQKEMRSIRGKEIAMIFQEPMTSLNPVFTIGDQICEVLVLHE 123

Query: 121 QVSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEP 180
           ++    A ++A  L+  V +P     L +YPHQ SGGMRQRV+IA+ALA  P L+IADEP
Sbjct: 124 KLGKTAAMEQAKQLLDMVRLPDAAELLHRYPHQLSGGMRQRVMIAMALACRPKLLIADEP 183

Query: 181 TTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAK 240
           TTALDV+IQ QILN++R+L KK  +G + +THDMGVV+ + D V VM++G  VE GP   
Sbjct: 184 TTALDVTIQAQILNIMRDLQKKLGMGMVFITHDMGVVAEMADDVVVMWKGKKVEEGPVKD 243

Query: 241 VLGTPEHPYTRSLISAVPR-SDRKLDRFPLVSYIEEAKELKPLDVKSHWLGQSQDHRKY- 298
           +   P+HPYTR+L+SAVPR    + + FP    +   ++ +P+ +      + QD  KY 
Sbjct: 244 IFANPQHPYTRALLSAVPRLGSMEGEAFPKRLPLTVLQDGQPVVIGEE---RVQDTAKYD 300

Query: 299 TGPLLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARV 358
             PLL V+++ +RF  + +LF      + A   VSF +H GET  LVGESGSGKSTI R 
Sbjct: 301 QKPLLSVKDLFVRFDIRKNLFGKATHRLSAVQKVSFDIHAGETLALVGESGSGKSTIGRT 360

Query: 359 IAGLYQPNAGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEPI 418
           I  L    +G + F G   + + S  ER  +R+++Q +FQ+P+ S++PR  +   IAEPI
Sbjct: 361 IQQLQTAVSGEIAFNGRSYSQM-SAAERFRMRQEVQYIFQDPFASLDPRKTVGFSIAEPI 419

Query: 419 RFHKLTRSESETRQIVNDLLEHVGLGKMAGLKYPHEFSGGQRQRISIARALATRPRLLIC 478
             H L   +   R+ V++LLE VGL      +YPHEFSGGQRQR+ IARALA+ P+L+I 
Sbjct: 420 NTHGLINDQKAVRRRVDELLERVGLSSEHAARYPHEFSGGQRQRVCIARALASDPKLIIA 479

Query: 479 DEPTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVAP 538
           DE  SALDVS+QAQI+NL  DLQ E  L  LFISHD+ V+ +M  RV V+ +G ++E+  
Sbjct: 480 DEALSALDVSIQAQIINLFMDLQAERGLAYLFISHDMAVVEKMSHRVAVLYLGQIMELGS 539

Query: 539 TEQLFTDPQHEYSKKLISLMP 559
            +Q+F  P H+Y+++L+S +P
Sbjct: 540 RQQVFETPTHDYTRRLLSAVP 560



 Score =  190 bits (482), Expect = 2e-52
 Identities = 110/272 (40%), Positives = 164/272 (60%), Gaps = 15/272 (5%)

Query: 3   LLEVKNLRIEYPSRHGVH-------AAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVID 55
           LL VK+L + +  R  +        +AV+ ++ DI  GE + +VGESG+GKST+G  +  
Sbjct: 304 LLSVKDLFVRFDIRKNLFGKATHRLSAVQKVSFDIHAGETLALVGESGSGKSTIGRTIQQ 363

Query: 56  LLSPPGTIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTET 115
           L     T   GE+  NG   S +S      +R  ++ +IFQDP  SL+P  TV   + E 
Sbjct: 364 LQ----TAVSGEIAFNGRSYSQMSAAERFRMR-QEVQYIFQDPFASLDPRKTVGFSIAEP 418

Query: 116 IHANMQVSAEEAYQRALS-LMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDL 174
           I+ +  ++ ++A +R +  L+++VG+        +YPH+FSGG RQRV IA ALA +P L
Sbjct: 419 INTHGLINDQKAVRRRVDELLERVGLSS--EHAARYPHEFSGGQRQRVCIARALASDPKL 476

Query: 175 IIADEPTTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVE 234
           IIADE  +ALDVSIQ QI+NL  +L  +  +  + ++HDM VV  ++ RVAV+Y G ++E
Sbjct: 477 IIADEALSALDVSIQAQIINLFMDLQAERGLAYLFISHDMAVVEKMSHRVAVLYLGQIME 536

Query: 235 FGPTAKVLGTPEHPYTRSLISAVPRSDRKLDR 266
            G   +V  TP H YTR L+SAVP +D  ++R
Sbjct: 537 LGSRQQVFETPTHDYTRRLLSAVPVADPTIER 568