Pairwise Alignments

Query, 571 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 616 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  454 bits (1169), Expect = e-132
 Identities = 248/562 (44%), Positives = 354/562 (62%), Gaps = 15/562 (2%)

Query: 3   LLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPGT 62
           +L V+NL   +    G  + V++++ DI   E V +VGESG+GKS    +++ LL    +
Sbjct: 18  VLSVQNLTTSFRVDGGWKSVVRNMSFDIAPRETVAIVGESGSGKSVTSLSIMRLLDRKTS 77

Query: 63  IAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANMQV 122
              G+V L G  +  L  + MR+VRG  I  IFQ+PMTSLNP+F +  Q+ E +  +  +
Sbjct: 78  RIEGKVMLGGRDLLALPEEEMRKVRGKDISMIFQEPMTSLNPIFPIGKQIAEALTVHQDI 137

Query: 123 SAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEPTT 182
           S+  A    + L+++V IP   +R   YPHQFSGGMRQRV+IA+ALA +P L+IADEPTT
Sbjct: 138 SSSAAKAEVIRLLEKVRIPNAASRFGDYPHQFSGGMRQRVMIAMALASKPKLLIADEPTT 197

Query: 183 ALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAKVL 242
           ALDV+IQ QIL+LI++L ++  +  + +THDMGVV+ V DR  VM+RGD+VE G T  + 
Sbjct: 198 ALDVTIQGQILDLIKQLQEEEGMSVLFITHDMGVVAEVADRTIVMFRGDVVETGTTDDIF 257

Query: 243 GTPEHPYTRSLISAVP-----RSDRKLDRFPLVSYIEEAKELKPLDVKSHWLGQSQDHRK 297
              +HPYTR+L+SAVP     RS     RFP++  I+  +    ++ K    G       
Sbjct: 258 HRGQHPYTRALLSAVPKLGSMRSRLLPARFPIID-IKTGESPPVVETKDTVSGGKT---- 312

Query: 298 YTGPLLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIAR 357
              P+L V+++  RF  +  LF  +   V A   VSF + EGET  LVGESG GKST  R
Sbjct: 313 ---PILSVKDLTTRFDIRSGLFGRKSGAVHAVEKVSFDLAEGETLSLVGESGCGKSTTGR 369

Query: 358 VIAGLYQPNAGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEP 417
            I  L +P +G VT +G ++  L      R +RR +QMVFQ+P+ S++PRM +   I EP
Sbjct: 370 SITRLIEPTSGNVTLDGYEVLKL-DRTTLRTMRRSVQMVFQDPFASLDPRMSVGTAIMEP 428

Query: 418 IRFHKLTRSESETRQIVNDLLEHVGLGKMAGLKYPHEFSGGQRQRISIARALATRPRLLI 477
              H+L + +++ R+   DLLE VGL      ++PHEFSGGQRQRI+IAR+L   P++++
Sbjct: 429 FMEHRLGQ-KAQAREKAADLLEKVGLSPDMMKRFPHEFSGGQRQRIAIARSLMLDPKVIV 487

Query: 478 CDEPTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVA 537
            DE  SALDVS++AQ+ NLL DLQ  LNL  LFISHD+ V+ ++  RV VM +G ++E+ 
Sbjct: 488 ADEAVSALDVSIKAQVCNLLLDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIG 547

Query: 538 PTEQLFTDPQHEYSKKLISLMP 559
           P   +F +PQH Y+KKL+S +P
Sbjct: 548 PRAAVFDNPQHPYTKKLMSAVP 569



 Score =  189 bits (481), Expect = 2e-52
 Identities = 111/304 (36%), Positives = 175/304 (57%), Gaps = 18/304 (5%)

Query: 3   LLEVKNLRIEYPSRHGVHA-------AVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVID 55
           +L VK+L   +  R G+         AV+ ++ D+  GE + +VGESG GKST G ++  
Sbjct: 314 ILSVKDLTTRFDIRSGLFGRKSGAVHAVEKVSFDLAEGETLSLVGESGCGKSTTGRSITR 373

Query: 56  LLSPPGTIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTET 115
           L+ P      G V L+G ++  L    +R +R S +  +FQDP  SL+P  +V   + E 
Sbjct: 374 LIEP----TSGNVTLDGYEVLKLDRTTLRTMRRS-VQMVFQDPFASLDPRMSVGTAIMEP 428

Query: 116 IHANMQVSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLI 175
              +      +A ++A  L+++VG+    + +K++PH+FSGG RQR+ IA +L  +P +I
Sbjct: 429 FMEHRLGQKAQAREKAADLLEKVGLSP--DMMKRFPHEFSGGQRQRIAIARSLMLDPKVI 486

Query: 176 IADEPTTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEF 235
           +ADE  +ALDVSI+ Q+ NL+ +L +  N+  + ++HDM VV  V+ RVAVMY G++VE 
Sbjct: 487 VADEAVSALDVSIKAQVCNLLLDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEI 546

Query: 236 GPTAKVLGTPEHPYTRSLISAVPRSDRKLDRFPLVSYIEEAKE-LKPLDV---KSHWLGQ 291
           GP A V   P+HPYT+ L+SAVP  D    +       +E K  ++P+D    + H+   
Sbjct: 547 GPRAAVFDNPQHPYTKKLMSAVPVPDPARRQIRRNMATDEIKSPIRPVDYVPPQRHYRED 606

Query: 292 SQDH 295
           S  H
Sbjct: 607 SAGH 610



 Score =  181 bits (459), Expect = 8e-50
 Identities = 106/271 (39%), Positives = 156/271 (57%), Gaps = 14/271 (5%)

Query: 301 PLLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIA 360
           P+L V+N+   F            +     N+SF +   ET  +VGESGSGKS  +  I 
Sbjct: 17  PVLSVQNLTTSFRVDGG-------WKSVVRNMSFDIAPRETVAIVGESGSGKSVTSLSIM 69

Query: 361 GLYQPNA----GRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAE 416
            L         G+V   G DL AL  E  R+   + + M+FQ P TS+NP   I   IAE
Sbjct: 70  RLLDRKTSRIEGKVMLGGRDLLALPEEEMRKVRGKDISMIFQEPMTSLNPIFPIGKQIAE 129

Query: 417 PIRFHKLTRSESETRQIVNDLLEHVGLGKMAGL--KYPHEFSGGQRQRISIARALATRPR 474
            +  H+   S +   +++  LLE V +   A     YPH+FSGG RQR+ IA ALA++P+
Sbjct: 130 ALTVHQDISSSAAKAEVIR-LLEKVRIPNAASRFGDYPHQFSGGMRQRVMIAMALASKPK 188

Query: 475 LLICDEPTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLL 534
           LLI DEPT+ALDV++Q QIL+L+K LQ+E  +++LFI+HD+ V+ ++ DR  VM  G ++
Sbjct: 189 LLIADEPTTALDVTIQGQILDLIKQLQEEEGMSVLFITHDMGVVAEVADRTIVMFRGDVV 248

Query: 535 EVAPTEQLFTDPQHEYSKKLISLMPEFTGLR 565
           E   T+ +F   QH Y++ L+S +P+   +R
Sbjct: 249 ETGTTDDIFHRGQHPYTRALLSAVPKLGSMR 279