Pairwise Alignments

Query, 571 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 544 a.a., peptide ABC transporter ATPase from Agrobacterium fabrum C58

 Score =  402 bits (1033), Expect = e-116
 Identities = 220/558 (39%), Positives = 329/558 (58%), Gaps = 38/558 (6%)

Query: 2   SLLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPG 61
           +LL V+ L +E       H  VK ++ DI  GEI G+VGESG+GK+    A+I LL P  
Sbjct: 5   TLLTVRGLSLEVAGSG--HRVVKDVSFDIAPGEIFGIVGESGSGKTLATRALISLLPPAI 62

Query: 62  TIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANMQ 121
            + GG V   G+ +  L  + +R +RG++IG +FQ+PMTSLNP  T+  QL E +  + +
Sbjct: 63  AVTGGSVIYKGQDVMSLPARELRRLRGAEIGVVFQEPMTSLNPSMTIGRQLEEGLILHTK 122

Query: 122 VSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEPT 181
           +S EE  ++ L ++++VGI  PE  L  YPH+FSGGMRQR+++A  +  +P L+IADEPT
Sbjct: 123 LSPEERREKILEMLRRVGIRDPEGALAAYPHEFSGGMRQRIMLASVMLLKPALLIADEPT 182

Query: 182 TALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAKV 241
           TALD  IQ  ++ L+ EL +      +L++HD+ +V+  T R+ VM +G +VE G T  +
Sbjct: 183 TALDAVIQRDVMELMVELTRAEGTAVLLISHDLPMVARYTSRIVVMEKGAIVEQGRTEDL 242

Query: 242 LGTPEHPYTRSLISAVPRSDRKLDRFPLVSYIEEAKELKPLDVKSHWLGQSQDHRKYTGP 301
           L  P HPYT+ L+S++P                             + G+ +       P
Sbjct: 243 LDAPRHPYTKKLLSSLP-----------------------------FRGEPRSIDTSKAP 273

Query: 302 LLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIAG 361
           ++    + + +  + SL +  +   +A + VS  +HEGE   LVG SGSGK+T+ R IAG
Sbjct: 274 MVSARGIVVDYAGRKSLLKKAKPK-RALHGVSIDIHEGEVVALVGGSGSGKTTLGRTIAG 332

Query: 362 LYQPNAGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEPIRFH 421
           L + + G + F+G +        +    R   QMVFQ+PY+S++PRM I  ++ E +R  
Sbjct: 333 LVKESEGHIRFQGRE-----RNEDWNDYRLNCQMVFQDPYSSLDPRMTIQALVEEALRLV 387

Query: 422 KLTRSESETRQIVNDLLEHVGLGKMAGLKYPHEFSGGQRQRISIARALATRPRLLICDEP 481
                ++  R+   + LE VGLG     +YPHE SGGQRQR++IARA+A RPR LI DEP
Sbjct: 388 P-GLDQAAKRKRALETLEEVGLGVDYAGRYPHELSGGQRQRVAIARAIARRPRFLIADEP 446

Query: 482 TSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVAPTEQ 541
            SALDV+V+AQ+L+L  DLQ     + LFISHDL V+ Q+ DRV VMQ G ++E    + 
Sbjct: 447 VSALDVTVRAQVLDLFSDLQKRYGFSCLFISHDLGVVEQVADRVVVMQDGRIIEEGDRDT 506

Query: 542 LFTDPQHEYSKKLISLMP 559
           +F  P+  Y+++L+S +P
Sbjct: 507 IFDSPREAYTRRLLSAIP 524



 Score =  155 bits (391), Expect = 5e-42
 Identities = 87/266 (32%), Positives = 148/266 (55%), Gaps = 17/266 (6%)

Query: 3   LLEVKNLRIEYPSRHGV------HAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDL 56
           ++  + + ++Y  R  +        A+  +++DI  GE+V +VG SG+GK+T+G  +  L
Sbjct: 274 MVSARGIVVDYAGRKSLLKKAKPKRALHGVSIDIHEGEVVALVGGSGSGKTTLGRTIAGL 333

Query: 57  LSPPGTIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETI 116
           +      + G +   G + +    +   + R      +FQDP +SL+P  T++  + E +
Sbjct: 334 VKE----SEGHIRFQGRERN----EDWNDYR-LNCQMVFQDPYSSLDPRMTIQALVEEAL 384

Query: 117 HANMQVSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLII 176
                +      +RAL  +++VG+    +   +YPH+ SGG RQRV IA A+A  P  +I
Sbjct: 385 RLVPGLDQAAKRKRALETLEEVGLGV--DYAGRYPHELSGGQRQRVAIARAIARRPRFLI 442

Query: 177 ADEPTTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFG 236
           ADEP +ALDV+++ Q+L+L  +L K+    C+ ++HD+GVV  V DRV VM  G ++E G
Sbjct: 443 ADEPVSALDVTVRAQVLDLFSDLQKRYGFSCLFISHDLGVVEQVADRVVVMQDGRIIEEG 502

Query: 237 PTAKVLGTPEHPYTRSLISAVPRSDR 262
               +  +P   YTR L+SA+P  D+
Sbjct: 503 DRDTIFDSPREAYTRRLLSAIPALDQ 528