Pairwise Alignments

Query, 571 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 630 a.a., ABC transporter, nucleotide binding/ATPase protein (oligopeptide) from Agrobacterium fabrum C58

 Score =  433 bits (1114), Expect = e-126
 Identities = 245/575 (42%), Positives = 361/575 (62%), Gaps = 29/575 (5%)

Query: 3   LLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPGT 62
           LL ++NLR+ +    G   AV+  +L I  G++  +VGESG+GKS +G  ++ +      
Sbjct: 7   LLRIENLRVSFSLMGGTIDAVRDTSLRILPGKVTALVGESGSGKSVIGQTIMGIHPKTAR 66

Query: 63  IAGGEVYLNGEKISG---------LSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLT 113
           + G  ++ + E  +             + +R +RG++IG IFQ+PMTS +PL T+ +Q+ 
Sbjct: 67  VNGRVLFTDPENAAAGPIDLLQLPKDGREIRSIRGNRIGLIFQEPMTSFSPLHTIGNQID 126

Query: 114 ETIHANMQVSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPD 173
           E +  +  +S  E  ++    +  VG  +P+  +  YP + SGGMRQR +IA+AL   P 
Sbjct: 127 EALRIHSILSPAERAEKMYETLDLVGFSKPKKVVNMYPFELSGGMRQRAMIAMALICRPA 186

Query: 174 LIIADEPTTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLV 233
           L+IADEPTTALDV+IQ QIL L+R+L  + N+  +L+THD+GVV+N+ D VAV+Y+G+++
Sbjct: 187 LLIADEPTTALDVTIQAQILKLLRDLQSRLNMSMLLITHDLGVVANIADEVAVIYQGEIM 246

Query: 234 EFGPTAKVLGTPEHPYTRSLISAVPRSDRKLDRFPLVSYIEEAKELKPLDVKSHWL--GQ 291
           E G    +   P HPY + L++AVP  D K          E  K L+ + V    L   +
Sbjct: 247 EAGTVDDIFKAPGHPYLKGLMAAVPHFDMKPG--------ERLKALREIKVDHESLVGKK 298

Query: 292 SQDHRKYTGPLLKVENVNLRFVTKDSLF--ESRREYVQASNNVSFAVHEGETFGLVGESG 349
           +    K  GPLL V+N++  F T+ S +  +S     +A N+VSF +  GE  GLVGESG
Sbjct: 299 TAAVNKTPGPLLTVDNISKTFTTRKSSWFRKSDANATKAVNSVSFEICRGECLGLVGESG 358

Query: 350 SGKSTIARVIAGLYQPNAGRVTF---EG-IDLTALKSEHERRPLRRQMQMVFQNPYTSMN 405
           SGK+T+++++    +P+ G +TF   EG ID+   K + + + LR ++QMVFQ+P +S++
Sbjct: 359 SGKTTVSKILMRAVRPDEGSITFHRPEGDIDVLNAK-DGDLKELRSKIQMVFQDPISSLS 417

Query: 406 PRMKIFDIIAEPIRFHKLTRSESETR-QIVNDLLEHVGLGKMAGLKYPHEFSGGQRQRIS 464
           PRM + +I++EP+  H   R +++ R + V  L+  +GLG+ A  +YPH FSGGQRQRI 
Sbjct: 418 PRMTVGNILSEPLEIH--GRGDAKYRAEKVRGLVRAIGLGESALNRYPHSFSGGQRQRIG 475

Query: 465 IARALATRPRLLICDEPTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDR 524
           IARALA  P LLICDEP SALDVSVQAQILNLLKDLQ +L LT LFISH+L V+  M DR
Sbjct: 476 IARALALGPELLICDEPVSALDVSVQAQILNLLKDLQQDLGLTYLFISHNLAVVDYMADR 535

Query: 525 VGVMQMGTLLEVAPTEQLFTDPQHEYSKKLISLMP 559
           V VM  G ++E+AP E L   P H Y+K L++ +P
Sbjct: 536 VAVMCEGRIVELAPREILMRSPIHPYTKSLLAAVP 570



 Score =  173 bits (439), Expect = 2e-47
 Identities = 104/250 (41%), Positives = 161/250 (64%), Gaps = 15/250 (6%)

Query: 22  AVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPP-GTIA----GGEVYLNGEKIS 76
           AV S++ +I RGE +G+VGESG+GK+TV   ++  + P  G+I      G++ +   K  
Sbjct: 337 AVNSVSFEICRGECLGLVGESGSGKTTVSKILMRAVRPDEGSITFHRPEGDIDVLNAKDG 396

Query: 77  GLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANMQVSAEEAYQRALSLMK 136
            L     +E+R SKI  +FQDP++SL+P  TV + L+E +  + +  A+   ++   L++
Sbjct: 397 DL-----KELR-SKIQMVFQDPISSLSPRMTVGNILSEPLEIHGRGDAKYRAEKVRGLVR 450

Query: 137 QVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEPTTALDVSIQDQILNLI 196
            +G+   E+ L +YPH FSGG RQR+ IA ALA  P+L+I DEP +ALDVS+Q QILNL+
Sbjct: 451 AIGLG--ESALNRYPHSFSGGQRQRIGIARALALGPELLICDEPVSALDVSVQAQILNLL 508

Query: 197 RELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAKVLGTPEHPYTRSLISA 256
           ++L +   +  + ++H++ VV  + DRVAVM  G +VE  P   ++ +P HPYT+SL++A
Sbjct: 509 KDLQQDLGLTYLFISHNLAVVDYMADRVAVMCEGRIVELAPREILMRSPIHPYTKSLLAA 568

Query: 257 VPRSDRKLDR 266
           VP  D  LDR
Sbjct: 569 VPFPD--LDR 576



 Score =  170 bits (430), Expect = 2e-46
 Identities = 109/275 (39%), Positives = 153/275 (55%), Gaps = 23/275 (8%)

Query: 302 LLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIAG 361
           LL++EN+ + F       ++ R+        S  +  G+   LVGESGSGKS I + I G
Sbjct: 7   LLRIENLRVSFSLMGGTIDAVRD-------TSLRILPGKVTALVGESGSGKSVIGQTIMG 59

Query: 362 LYQPNA---GRVTFEG--------IDLTAL-KSEHERRPLR-RQMQMVFQNPYTSMNPRM 408
           ++   A   GRV F          IDL  L K   E R +R  ++ ++FQ P TS +P  
Sbjct: 60  IHPKTARVNGRVLFTDPENAAAGPIDLLQLPKDGREIRSIRGNRIGLIFQEPMTSFSPLH 119

Query: 409 KIFDIIAEPIRFHKLTRSESETRQIVNDLLEHVGLGKMAGL--KYPHEFSGGQRQRISIA 466
            I + I E +R H +  S +E  + + + L+ VG  K   +   YP E SGG RQR  IA
Sbjct: 120 TIGNQIDEALRIHSIL-SPAERAEKMYETLDLVGFSKPKKVVNMYPFELSGGMRQRAMIA 178

Query: 467 RALATRPRLLICDEPTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVG 526
            AL  RP LLI DEPT+ALDV++QAQIL LL+DLQ  LN++ML I+HDL V+  + D V 
Sbjct: 179 MALICRPALLIADEPTTALDVTIQAQILKLLRDLQSRLNMSMLLITHDLGVVANIADEVA 238

Query: 527 VMQMGTLLEVAPTEQLFTDPQHEYSKKLISLMPEF 561
           V+  G ++E    + +F  P H Y K L++ +P F
Sbjct: 239 VIYQGEIMEAGTVDDIFKAPGHPYLKGLMAAVPHF 273