Pairwise Alignments

Query, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

Subject, 779 a.a., ATP-dependent helicase from Rhodanobacter sp000427505 FW510-R12

 Score =  136 bits (343), Expect = 3e-36
 Identities = 161/654 (24%), Positives = 273/654 (41%), Gaps = 89/654 (13%)

Query: 2   KLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
           +L   Q   V++  G  LV A  GSGKT V+   +  LV+  G     + A+ F   A  
Sbjct: 8   ELTAEQKAVVRHTEGHALVEAAPGSGKTTVLVAYLRRLVKTGG-NPNAMLALMFNKSAQL 66

Query: 62  EMKERVAQTLGKGESRGLMVSTFHTLGLNII----------RREFKALGLKAGFSLFDDQ 111
             + R+ + LG+G      V T H++G  I+          R + +  G KA      D 
Sbjct: 67  SFEARLRRALGEGPIPD--VRTLHSIGNRILAQLVSGGMLPREKLETSGKKA------DA 118

Query: 112 DQLALLKEL----------TEKQLDGDKDLLRLLLSTISNWKNDMLTPPQA-KAMAKGEQ 160
                LKE           T+ Q  G    + L+       K+D+  P +  +       
Sbjct: 119 FARRALKEAWARTGGSATPTQAQYQGFSQFITLV-------KSDLRPPAEVFEESGFAPD 171

Query: 161 QLLFAHCFELYQKQMQSYNALDFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQDTN 220
              F   F+L  +  +    + +DDLI  P++ L ++ E+   + NR   ++VDE+QD N
Sbjct: 172 CRAFVIAFQLLLQDQEKRRVIFYDDLIYRPMVYLDAHPELWSMFANRYERIVVDEFQDIN 231

Query: 221 TSQYELVKLLVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGED-FPSLKLIKLEQNYRS 279
              + +V+ L G R  +   GD  QSIY++RG++   +    E  F       + + +R 
Sbjct: 232 AISFFMVQGLAGTRASVMGCGDPKQSIYAFRGSRVTLMTRHFEQVFQPCTRYPMSRTFRF 291

Query: 280 TSRILRAANILIANNPHVYQKALFSELAEGEKLKVILANNEDHE--AERV---------I 328
              I   AN LI              L+E + L +++A+N + +   ER+         +
Sbjct: 292 GHEIAMMANNLIT-------------LSEEKGLGLVVADNANPKTRVERMPLKAGKDSGV 338

Query: 329 AEIIAHKFLNRTEYRDYAILYRGNHQSRLIEKSLTQNRVPYKLSGGTSFFARAEIKDIMA 388
            E++A  + +    RD A+L R        E  L +  VPY + G        EI  ++ 
Sbjct: 339 VELLA-PYEHAGRLRDTAMLARNFSHLVPYEIELAEAGVPYHVYGREGLLFLPEIAALVC 397

Query: 389 YL-----RVLVNPDDDNAFL-RIVNTPK----REIGPATLEKLGSYANMRGKSLFTASFE 438
            +     R ++ P+D   F+  ++ TP      EI     E +  Y    G+        
Sbjct: 398 AVSLVAGRWIIEPEDRVHFIFSLLTTPSPFITYEILREVAEDMEPYLEGAGRRELPGMLA 457

Query: 439 --LGLEQHLSGRGLENL-RRFTEWLVAIADNAERGNTVEAVRALVRDIRYEDWLYETSAS 495
                 +  + RG +NL  R     + +     +      VRA +   R  D +   + +
Sbjct: 458 KIAASIRSKNARGAQNLDERVDALRLLVGGTLAQAPAATIVRAYMAHTRMRDVIERAAPT 517

Query: 496 PKAAEMRMKNVSDLYSWIVADLEGDNPDQQEKTLKEVVQRLTLRDMMERGEENDDSDAVQ 555
           P+ A   + N+       +A+  G        ++ E ++ L     + +G+E    D V 
Sbjct: 518 PEQAAESLGNLDAFVK--LAERAG--------SIDEFLEVLGPMAAL-KGDEPPAGDHVM 566

Query: 556 LMTLHASKGLEFPYVYLIGAEEGILPHQTSIDEENVEEERRLMYVGITRAQREL 609
           L TLH SKGLE+  V ++G   G+ P  +++ +++V+EERRL +VGITRA   L
Sbjct: 567 LTTLHRSKGLEWSLVMMVGLTRGVFP--SALPDKDVDEERRLCFVGITRAMDRL 618