Pairwise Alignments

Query, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

Subject, 804 a.a., ATP-dependent DNA helicase PcrA from Xanthobacter sp. DMC5

 Score =  402 bits (1034), Expect = e-116
 Identities = 262/653 (40%), Positives = 370/653 (56%), Gaps = 35/653 (5%)

Query: 3   LNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAARE 62
           LNP Q EAV+ + GP LVLAGAG+GKTRV+T ++A+++         I  VTFTNKAARE
Sbjct: 33  LNPEQREAVETLEGPLLVLAGAGTGKTRVLTARVAHILASGRAFPSQILVVTFTNKAARE 92

Query: 63  MKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKEL-T 121
           MK+R+   +G        + TFH++G+ I+RR  + +GLK+GF++ D  DQ+ LLK+L  
Sbjct: 93  MKDRIHGMVGDQIEGMPWLGTFHSIGVRILRRHHELVGLKSGFTILDTDDQIRLLKQLLA 152

Query: 122 EKQLDGDKDLLRLLLSTISNWKNDMLTPP-----QAKAMAKGEQQLLFAHCFELYQKQMQ 176
            + +D  +   RLL +TI  WKN  L+P      +    A G+  +L+A     YQ +++
Sbjct: 153 AENIDEKRWPARLLAATIDGWKNRGLSPKDVPPGEGAVFANGKGGMLYA----AYQARLK 208

Query: 177 SYNALDFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQDTNTSQYELVKLLVGERGR 236
           + NA+DF DL+L  + L R N +V   +  R +YLLVDEYQDTN +QY  ++LL      
Sbjct: 209 ALNAVDFGDLLLEGIRLFRENPDVLAEYHRRFKYLLVDEYQDTNVAQYLWLRLLAQGSKN 268

Query: 237 LTVVGDDDQSIYSWRGAKPQNLVLLGEDFPSLKLIKLEQNYRSTSRILRAANILIANNPH 296
           +  VGDDDQSIY WRGA+  N++    DFP  K+I+LE+NYRST  IL +A  LIA+N  
Sbjct: 269 VCCVGDDDQSIYGWRGAEVDNILRFESDFPGAKVIRLERNYRSTGHILASAAHLIAHNEG 328

Query: 297 VYQKALFSELAEGEKLKVILANNEDHEAERVIAEIIAHKFLNRTEYR--DYAILYRGNHQ 354
              K LFSE  EGE++ V  A +   EA  V  EI A   L R  +R  + AIL R + Q
Sbjct: 329 RLGKTLFSEGDEGERVSVTGAWDSGEEARAVGEEIEA---LQRAGHRLSEIAILVRASFQ 385

Query: 355 SRLIEKSLTQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPKREIG 414
            R  E       +PY++ GG  F+ RAEI+D +AYLR + +  DD AF RIVN PKR IG
Sbjct: 386 MREFEDRFVTLGMPYRVIGGPRFYERAEIRDALAYLRCVNSTADDLAFERIVNVPKRGIG 445

Query: 415 PATLEKLGSYANMRGKSLFTASFELGLEQHLSGRGLENLRRFTEWLVAIADNAERGNTVE 474
            AT++++   A   G  L  A+  L   + L  +    LR   +      + A   +  E
Sbjct: 446 DATVKQIHDVARAAGVPLQEAARVLTESEELKPKVRGTLRGLIQAFERWREQARTMSHTE 505

Query: 475 AVRALVRDIRY-EDWLYETSASPKAAEMRMKNVSDLYSWIVADLEGDNPDQQEKTLKEVV 533
               ++ +  Y E W  + SA    A  R++N+ +L    V  +E        ++L   +
Sbjct: 506 IAEIVLDESGYTEMWQKDRSAE---AAGRLENLKEL----VRSME------PFESLPGFL 552

Query: 534 QRLTLRDMMERGEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGILPHQTSIDEE---N 590
           + ++L   ++ G      DAVQ+MTLH++KGLEF  V+L G EEG+ PHQ ++DE+    
Sbjct: 553 EHISLVMDVDNGA---GEDAVQVMTLHSAKGLEFDTVFLPGWEEGLFPHQRALDEQGKAG 609

Query: 591 VEEERRLMYVGITRAQRELTFIVCKERRQFGELIKPSQSRFLDELPQDDIEWE 643
           +EEERRL YVGITRA+          RR  G       SRFLDELP   ++ E
Sbjct: 610 LEEERRLAYVGITRARASARIWFASNRRIHGMWNSTVPSRFLDELPDAHVQVE 662