Pairwise Alignments

Query, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

Subject, 700 a.a., ATP-dependent DNA helicase Rep from Variovorax sp. SCN45

 Score =  538 bits (1387), Expect = e-157
 Identities = 322/702 (45%), Positives = 430/702 (61%), Gaps = 54/702 (7%)

Query: 3   LNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAARE 62
           LNP Q EAV Y+ GPCLVLAGAGSGKTRVIT+KI  L+Q  G + + IAA+TFTNKAA E
Sbjct: 5   LNPAQLEAVNYMYGPCLVLAGAGSGKTRVITHKIGRLIQS-GLEPQRIAAITFTNKAAAE 63

Query: 63  MKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKELTE 122
           M+ER    +GK ++R ++V TFH LG+ ++R +   LGLK  FS+ D  D   +LK+   
Sbjct: 64  MRERAKDLIGK-DARKVVVCTFHALGVRMMREDGAVLGLKKAFSILDSDDVTKILKDA-- 120

Query: 123 KQLDGDKDLL--RLLLSTISNWKNDMLTPPQAKAMAKGEQQLLFAHCFELYQKQMQSYNA 180
               G  D+   R+   TIS WKN  L   QA+A A  + + + A     Y++++Q+Y +
Sbjct: 121 ---GGTTDIATARIWQWTISKWKNMGLNAKQAEAAAVDDNERITARIMAHYEERLQAYQS 177

Query: 181 LDFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQDTNTSQYELVKLLVGERGRLTVV 240
           +DFDDLI +P+ LL    EVR +WQ  + ++LVDEYQDTN +QYE++K L GERG  T V
Sbjct: 178 VDFDDLIGMPLKLLYEFPEVRAKWQAALGHILVDEYQDTNATQYEVLKALAGERGHFTAV 237

Query: 241 GDDDQSIYSWRGAKPQNLVLLGEDFPSLKLIKLEQNYRSTSRILRAANILIANNPHVYQK 300
           GDDDQSIY WRGA   NL  L  DFP+LK+IKLEQNYRSTS ILRAAN +I  NP ++ K
Sbjct: 238 GDDDQSIYGWRGATLDNLRKLPVDFPTLKVIKLEQNYRSTSAILRAANNVIGPNPKLFPK 297

Query: 301 ALFSELAEGEKLKVILANNEDHEAERVIAEIIAHKFLNRT-------EYRDYAILYRGNH 353
            LFSEL EGE ++++ A++E HEAER +A I++ +  + T       E+RD+AILYR NH
Sbjct: 298 TLFSELGEGEPVRIVDADSELHEAERAVARIVSLRAGDATTQGKQYKEFRDFAILYRANH 357

Query: 354 QSRLIEKSLTQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPKREI 413
           Q+R+ E++L + ++PYK+SGG SFF RAEIKD+  + R+ VN DDD AFLR + TPKR I
Sbjct: 358 QARVFEQALRKAQIPYKVSGGQSFFDRAEIKDLCGWFRLWVNNDDDPAFLRAITTPKRGI 417

Query: 414 GPATLEKLGSYANMRGKSLFTASFELGLEQHLSGRGLENLRRFTEWLVAIADNAERGNTV 473
           G  TL  LGS+A+    SLF A F   L   +  R LE +  F  ++  +   A R    
Sbjct: 418 GHTTLASLGSFASQYKLSLFEALFSPSLPSVMPKRTLEGIHEFGRYINDLEYRARRTMGA 477

Query: 474 EAVRAL----VRDIRYEDWLYETSASPKAAEMRMKNVSDLYSWI-------VADLEG-DN 521
           E  R      +++I YE  LY+   S  AA  R  NV +   W+       + D  G DN
Sbjct: 478 EDSRTFMLDWLKEIDYEKHLYDGEDSESAAASRWTNVLEFVDWMSQRAGGTIDDTSGADN 537

Query: 522 P-DQQEKTLKEVVQRLTLRDMMERGEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGIL 580
           P + + K+L EV Q ++L   +   E   D D V L TLHASKGLE+P+V LIG  EG+L
Sbjct: 538 PIETERKSLLEVAQTISLLSTI--SERQQDQDVVTLSTLHASKGLEWPHVMLIGVSEGLL 595

Query: 581 PHQTSIDE-----------ENVEEERRLMYVGITRAQRELTFIVCKERRQFGELIKPSQS 629
           P +   D            + ++EERRLMYVGITRAQR L     K+R+Q  E++    S
Sbjct: 596 PFKLDDDNGRQQKVSEDTLQRLQEERRLMYVGITRAQRSLAVSWTKKRKQGREMVPCVPS 655

Query: 630 RFLDELPQDDIEWEVKKKPVTQEERMAKGQAHIANLRAMFKK 671
           RF+ E+  D        K  T+E+   K +A    LRA F +
Sbjct: 656 RFIAEMGLD--------KATTREDPREKLKA----LRAEFAR 685