Pairwise Alignments

Query, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

Subject, 705 a.a., ATP-dependent helicase from Variovorax sp. OAS795

 Score =  171 bits (433), Expect = 1e-46
 Identities = 138/449 (30%), Positives = 221/449 (49%), Gaps = 41/449 (9%)

Query: 3   LNPRQDEAVKYVSG--------PCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVT 54
           LN  Q  AV++  G        P LV+AGAGSGKT  + +++A+L+   G   + +  +T
Sbjct: 27  LNDAQRAAVEHGIGTLVGRDERPLLVIAGAGSGKTSTLAHRVAHLIAG-GVDPQRLLLLT 85

Query: 55  FTNKAAREMKERVAQTLG-----KGESRGLM--VSTFHTLGLNIIRREFKALGLKAGFSL 107
           F+ +AA EM+ R  Q L      K E    +    TFH +G  ++R     +GLK  F++
Sbjct: 86  FSRRAAIEMERRAGQVLARVLGFKSEKPPALPWAGTFHGIGARLLREYAAHIGLKDNFTI 145

Query: 108 FDDQDQLALLKELTEKQLDGDKDLLRL-----LLSTISNWKNDMLTPPQAKAMAKG---- 158
            D  D   L+  L   ++     + R       L+  S   N     P A  +A+     
Sbjct: 146 HDRGDAEDLMG-LVRHEIGLSSSVNRFPRKGTCLAIYSRCVNTRA--PLADVLAQAFPWC 202

Query: 159 -EQQLLFAHCFELYQKQMQSYNALDFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQ 217
            E +      F  Y +  Q  N LD+DDL+L    ++ +   + +    R  ++LVDEYQ
Sbjct: 203 AEWEAELKRLFGAYVEAKQQQNVLDYDDLLLYWAGMV-AEPALAELVGARFDHVLVDEYQ 261

Query: 218 DTNTSQYELVKLLVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGEDFPS-----LKLIK 272
           DTN  Q  ++  L  +   +TVVGDD QSIYS+RGA  +N++    DFPS      +++ 
Sbjct: 262 DTNLLQASILLALKPDGRGVTVVGDDAQSIYSFRGATVRNIL----DFPSQFSQAARVVT 317

Query: 273 LEQNYRSTSRILRAANILIANNPHVYQKALFSELAEGEKLKVILANNEDHEAERVIAEII 332
           LE+NYRST  IL  +N +IA+    + K L+++     + +++L  +E  +A  V  +++
Sbjct: 318 LERNYRSTQPILDVSNRVIAHAAERHAKTLWTDKPSAGRPQLVLVPDEAQQAVWVADKVL 377

Query: 333 AHKFLNRTEYRDYAILYRGNHQSRLIEKSLTQNRVPYKLSGGTSFFARAEIKDIMAYLRV 392
           AH+       +  A+L+R +  S  +E  L +  +P+   GG  F   + +KD++A LR 
Sbjct: 378 AHR-EGGLALKSQAVLFRASTHSAPLELELARRNIPFVKYGGLKFLEASHVKDLLAVLRF 436

Query: 393 LVNPDDDNAFLRIVNTPKREIGPATLEKL 421
             NP    A  R+       IGPAT  +L
Sbjct: 437 AENPRGRMAGFRVTQLIP-GIGPATGTRL 464



 Score = 52.8 bits (125), Expect = 6e-11
 Identities = 25/64 (39%), Positives = 41/64 (64%)

Query: 550 DSDAVQLMTLHASKGLEFPYVYLIGAEEGILPHQTSIDEENVEEERRLMYVGITRAQREL 609
           D D + L T+H++KG E+  V+++   +G LP   +   + +EEERRL+YV +TRA+  L
Sbjct: 576 DEDYLILSTIHSAKGQEWNSVHVLNVVDGCLPADVAQGAQELEEERRLLYVAMTRARDHL 635

Query: 610 TFIV 613
             +V
Sbjct: 636 HLLV 639