Pairwise Alignments

Query, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

Subject, 758 a.a., ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) from Sphingobium sp. HT1-2

 Score =  400 bits (1027), Expect = e-115
 Identities = 250/650 (38%), Positives = 369/650 (56%), Gaps = 29/650 (4%)

Query: 3   LNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAARE 62
           LN  Q EAV    GP LVLAGAG+GKT  +T ++A+LV         I AVTFTNKAARE
Sbjct: 17  LNEPQREAVLTTEGPVLVLAGAGTGKTAALTARLAHLVATQRAWPSEILAVTFTNKAARE 76

Query: 63  MKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKELTE 122
           M+ERV + +G        + TFH +   ++RR  + +GL++ F++ D  DQL L+K+L +
Sbjct: 77  MRERVGRMIGPAVEGMPWLGTFHAIAAKMLRRHAELVGLQSNFTILDTDDQLRLMKQLIQ 136

Query: 123 KQ-LDGDKDLLRLLLSTISNWKNDMLTPPQ-----AKAMAKGEQQLLFAHCFELYQKQMQ 176
            + +D  +   R L   I  WKN  LTP +     A+  A G+ Q L+A     YQ +++
Sbjct: 137 AEGIDEKRWPARQLAGLIDQWKNKGLTPEEVGAGEAEGYAHGKGQKLYA----AYQARLR 192

Query: 177 SYNALDFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQDTNTSQYELVKLLVGERGR 236
             NA DF DL+L  + +L+ + +V +++Q R +Y++VDEYQDTN+SQY  ++LL   R  
Sbjct: 193 EVNACDFGDLLLHSLTILKRHRDVLEQYQQRFKYIMVDEYQDTNSSQYLWLRLLAQTRKN 252

Query: 237 LTVVGDDDQSIYSWRGAKPQNLVLLGEDFPSLKLIKLEQNYRSTSRILRAANILIANNPH 296
           +  VGDDDQSIYSWRGA+  N++   +DFP   +++LEQNYRST  IL AA+ +IA N +
Sbjct: 253 ICCVGDDDQSIYSWRGAEVANILRFEKDFPGAVIVRLEQNYRSTPHILGAASGVIAENGN 312

Query: 297 VYQKALFSELAEGEKLKVILANNEDHEAERVIAEIIAHKFLNRTEYRDYAILYRGNHQSR 356
              K L++++  GEK++V+   +   EA RV  EI A      +   + AIL R  HQ+R
Sbjct: 313 RLGKTLWTDIDVGEKVRVLGVWDGPEEARRVGDEIEAIARAGGS-LDEVAILVRAQHQTR 371

Query: 357 LIEKSLTQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPKREIGPA 416
             E    Q  +PY++ GG  F+ RAEI+D +AYLR++  P DD AF RIVN PKR +G  
Sbjct: 372 EFEDRFIQIGLPYRIVGGFRFYERAEIRDALAYLRLVNQPADDLAFERIVNVPKRGLGDK 431

Query: 417 TLEKLGSYANMRGKSLFTASFELGLEQHLSGRGLENLRRFTEWLVAIADNAERGNTVEAV 476
            +EKL   A   G  L  A+  +     L+ +   +L  F   L    D A +    E  
Sbjct: 432 AVEKLHRLARAEGIPLALAAARILDTDELTPQARRSLGAFIGDLARWRDRAAQLPHAELA 491

Query: 477 RALVRDIRYEDWLYETSASPKAAEMRMKNVSDLYSWIVADLEGDNPDQQEKTLKEVVQRL 536
           R ++ +  Y   L    ++  A   R++N+S+L              ++ +TL   ++ +
Sbjct: 492 RQILDESGYTATLQAERSTESAG--RLENLSEL----------TRAMEEYETLGAFLEHV 539

Query: 537 TLRDMMERGEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGILPHQTSIDE---ENVEE 593
           +L   +   E   D   + +MT+HA+KGLEF  V+L G EEGI P Q ++DE    ++EE
Sbjct: 540 SL---VMDNEAQQDEQKLTIMTIHAAKGLEFDNVFLAGWEEGIFPSQRALDEGGLNSLEE 596

Query: 594 ERRLMYVGITRAQRELTFIVCKERRQFGELIKPSQSRFLDELPQDDIEWE 643
           ERRL YV ITRA++  T +    RR +G+      SRF+ ELP + ++ E
Sbjct: 597 ERRLAYVAITRARKRCTILHAANRRIYGQWTSSIPSRFVGELPPEHVDEE 646