Pairwise Alignments

Query, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

Subject, 669 a.a., helicase a single-stranded DNA dependent ATPase from Pseudomonas putida KT2440

 Score =  738 bits (1906), Expect = 0.0
 Identities = 373/672 (55%), Positives = 496/672 (73%), Gaps = 7/672 (1%)

Query: 2   KLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
           +LNPRQ EA  YV GP LVLAGAGSGKT VIT KIA+L+Q CG +A+ I A+TFTNKAAR
Sbjct: 3   RLNPRQQEARDYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAR 62

Query: 62  EMKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKELT 121
           EMKERVA  L  GE RGL V TFH LGLNIIR+E + LG K GFS+FD+ D  ALL ++ 
Sbjct: 63  EMKERVATLLRPGEGRGLTVCTFHNLGLNIIRKEHERLGYKPGFSIFDESDIKALLSDIM 122

Query: 122 EKQLDGDKDLLRLLLSTISNWKNDMLTPPQAKAMAKGEQQLLFAHCFELYQKQMQSYNAL 181
           +K+  GD D +  + + I  WKND++ PP+A   A+  ++   A  +  YQ+ ++++NA+
Sbjct: 123 QKEYSGD-DGIDEIKNMIGAWKNDLVLPPEALEKARNPREQTAAIVYTHYQRTLKAFNAV 181

Query: 182 DFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQDTNTSQYELVKLLVGERGRLTVVG 241
           DFDDLIL PV L + + EV +RWQNR+RYLLVDEYQDTN SQY LVK+L+G R + TVVG
Sbjct: 182 DFDDLILQPVKLFQEHPEVLERWQNRVRYLLVDEYQDTNASQYLLVKMLIGMRNQFTVVG 241

Query: 242 DDDQSIYSWRGAKPQNLVLLGEDFPSLKLIKLEQNYRSTSRILRAANILIANNPHVYQKA 301
           DDDQSIY+WRGA+P+NL+LL ED+PSLK++ LEQNYRSTSRILR AN+LIANNPH ++K 
Sbjct: 242 DDDQSIYAWRGARPENLMLLKEDYPSLKIVMLEQNYRSTSRILRCANVLIANNPHAFEKQ 301

Query: 302 LFSELAEGEKLKVILANNEDHEAERVIAEIIAHKFLNRTEYRDYAILYRGNHQSRLIEKS 361
           L+SE+  G++++VI   NE+ EAERV  EI+         Y D+AILYRGN+Q++LIE  
Sbjct: 302 LWSEMGVGDEIRVIRCKNEEAEAERVAMEILTLHLRTNRPYSDFAILYRGNYQAKLIELK 361

Query: 362 LTQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPKREIGPATLEKL 421
           L  ++VPY+LSGG SFF R E+KD+MAYLR+LVNPDDDNA+LR++N P+REIG  TLEKL
Sbjct: 362 LQHHQVPYRLSGGNSFFGRQEVKDLMAYLRLLVNPDDDNAYLRVINVPRREIGSTTLEKL 421

Query: 422 GSYANMRGKSLFTASFELGLEQHLSGRGLENLRRFTEWLVAIADNAERGNTVEAVRALVR 481
           G+YA  RG S++ AS ELGL +HL  R  E L+RF  WL  +       + + A+  ++R
Sbjct: 422 GNYATERGISMYAASEELGLGEHLDARYTERLQRFKHWLDGVRHKVALEDPIAALHEMIR 481

Query: 482 DIRYEDWLYETSASPKAAEMRMKNVSDLYSWIVADLEGDNPDQQEKTLKEVVQRLTLRDM 541
           DI YE+W+ + +AS KAAE R+ NV  L   +   LE D  ++ + T+++ + +L LRDM
Sbjct: 482 DIDYENWIRQQTASDKAAEFRISNVWFLVEALKNTLEKD--EEGDMTIEDAIGKLVLRDM 539

Query: 542 MER-GEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGILPHQTSIDEENVEEERRLMYV 600
           +ER  EE ++++ VQ+MTLHASKGLEFPYV+++G EE ILPH++SI+ + +EEERRL YV
Sbjct: 540 LERQQEEEENAEGVQMMTLHASKGLEFPYVFIMGMEEEILPHRSSIEADTIEEERRLAYV 599

Query: 601 GITRAQRELTFIVCKERRQFGELIKPSQSRFLDELPQDDIEWE-VKKKPVTQEERMAKGQ 659
           GITRA++ L F    +R+Q+GE+I  + SRFLDELP DD+ WE +   PV  E + A+G 
Sbjct: 600 GITRARQTLAFTFAAKRKQYGEIIDCTPSRFLDELPPDDLAWEGLDDAPV--EVKAARGN 657

Query: 660 AHIANLRAMFKK 671
             +A++RAM K+
Sbjct: 658 NALADIRAMLKR 669