Pairwise Alignments

Query, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

Subject, 734 a.a., ATP-dependent helicase from Paraburkholderia sabiae LMG 24235

 Score =  221 bits (563), Expect = 9e-62
 Identities = 194/653 (29%), Positives = 319/653 (48%), Gaps = 64/653 (9%)

Query: 2   KLNPRQDEAVKY-------VSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVT 54
           KLN  Q EAV+Y        SG  LV+AGAGSGKT  + +++A LV + G   R I  +T
Sbjct: 34  KLNEAQREAVEYGTDDVAKPSGALLVIAGAGSGKTNTLAHRVANLVVK-GTDPRRILLLT 92

Query: 55  FTNKAAREMKERVAQ----TLGKGES--RGLMVS-TFHTLGLNIIRREFKALGLKAGFSL 107
           F+ +AA EM  RV +     LG   +  +GL  S TFH++G  ++R     +GL   F++
Sbjct: 93  FSRRAALEMTRRVTRIASAALGTRAALAQGLTWSGTFHSVGARLLREYADLIGLSPTFTI 152

Query: 108 FDDQDQLALLK--------ELTEKQLDGDKDLLRLLLSTISNWKN--DMLTP--PQAKAM 155
            D +D   L+            EK+         +    ++   +  D+L    P  +  
Sbjct: 153 NDREDSADLMNLVRHELGFSAKEKRFPSKSACFAIYSRVVNTGASLADVLNSAFPWCREW 212

Query: 156 AKGEQQLLFAHCFELYQKQMQSYNALDFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDE 215
            + + ++LFA   +  QKQ    + LD+DDL+L     + +   +      R  ++LVDE
Sbjct: 213 -EADLRMLFAAYVDAKQKQ----SVLDYDDLLLY-WSHMAAEPAIAADLSGRFDHVLVDE 266

Query: 216 YQDTNTSQYELVKLLVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGEDF-PSLKLIKLE 274
           YQDTN  Q  ++  L  +   LTVVGDD QSIYS+RGA  +N++     F P  K + LE
Sbjct: 267 YQDTNRLQASILLALKPDGRGLTVVGDDAQSIYSFRGATVRNILDFPAHFDPPAKQVTLE 326

Query: 275 QNYRSTSRILRAANILIANNPHVYQKALFSELAEGEKLKVILANNEDHEAERVIAEIIAH 334
           +NYRST  IL A+N +I  +   Y K L+++ A  ++  ++   ++  +A  ++ +++A 
Sbjct: 327 RNYRSTQPILEASNAVIDLSTERYTKNLWTDKASAQRPHLVTVADDADQARYIVEQVLAA 386

Query: 335 KFLNRTEYRDYAILYRGNHQSRLIEKSLTQNRVPYKLSGGTSFFARAEIKDIMAYLRVLV 394
           +     + +  A+L+R  H S  +E  LT+  +P+   GG  F     +KD++A LR   
Sbjct: 387 REAG-MKLKSQAVLFRAAHHSATLEIELTRRNIPFVKFGGLKFLDSVHVKDVLAVLRWAE 445

Query: 395 NPDDDNAFLRIVNTPKREIGPATLEKLGSYANMRGKSLFTASFELGLEQHLSGRGLENLR 454
           NP D  A  R+V      +GPAT  ++      R  +L + S  L +   +SG     L 
Sbjct: 446 NPRDRVAGFRVVQL-LPGVGPATAARVLDDIAARADALGSGS-ALDVAHGVSGCAAGALA 503

Query: 455 RFT-------EWLVAIADNAE---RGNTVEAVRALVRDIRYEDWL---YETSASPKAAEM 501
            F        +W + +A  A    R     A   +VR   YE  L   +E ++  +A  +
Sbjct: 504 AFAPPARTLEDWHLFVAMMASVCGRQTPWPAEFEMVRR-WYEPHLERNHEDASIRQADLV 562

Query: 502 RMKNVSDLYSWIVADLEGDNPDQQEKTLKEVVQRLTLRDMMERGEENDDSDAVQLMTLHA 561
           +M++++  Y+             +E+ L E+          E G    D D + L T+H+
Sbjct: 563 QMESIAGTYA------------SRERFLTELTLDPPDATSDESGVPLIDEDYLILSTIHS 610

Query: 562 SKGLEFPYVYLIGAEEGILPHQTSI-DEENVEEERRLMYVGITRAQRELTFIV 613
           +KG E+  V+++   +G +P       EE ++EERRL+YV +TRA+ +L  ++
Sbjct: 611 AKGQEWRNVFVLNGVDGCIPSDLGTGSEEEIDEERRLLYVAMTRAKEDLHIVM 663