Pairwise Alignments

Query, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

Subject, 806 a.a., ATP-dependent DNA helicase UvrD/PcrA from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  358 bits (918), Expect = e-103
 Identities = 250/698 (35%), Positives = 370/698 (53%), Gaps = 68/698 (9%)

Query: 3   LNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAARE 62
           LN  Q  AV   +   L+LAGAGSGKTRV+T +IA+L+Q        I AVTFTNKAA+E
Sbjct: 18  LNAEQSAAVLLPAEHALILAGAGSGKTRVLTTRIAWLLQSGQVSPGGILAVTFTNKAAKE 77

Query: 63  MKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKELTE 122
           M  R++  L     RG+ + TFH L    +R   K   L A F + D QDQL+ +K L +
Sbjct: 78  MMTRLSAMLPINV-RGMWIGTFHGLCNRFLRAHHKLANLPATFQILDTQDQLSAIKRLCK 136

Query: 123 K-QLDGDKDLLRLLLSTISNWKNDMLTPPQAKAMAKGEQQLLFAHCFELYQKQMQSYNAL 181
           +  +D ++   + +   IS  K D   P    A  +  ++ L    + LY++Q Q    +
Sbjct: 137 QFNVDDERYPPKQIQYFISGCKEDGQRPHDVPARDEETRKKL--ELYALYEEQCQREGVV 194

Query: 182 DFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQDTNTSQYELVKL--------LVGE 233
           DF +L+L    +LR N+ VR+ +Q R R++L+DE+QDTN  QY  +K+        L   
Sbjct: 195 DFGELMLRSYEVLRDNDPVREHYQRRFRHILIDEFQDTNRLQYAWIKMFSAPPLEGLTPS 254

Query: 234 RGRLTVVGDDDQSIYSWRGAKPQNLVLLGEDFPSLKLIKLEQNYRSTSRILRAANILIAN 293
              +  VGDDDQSIY++RGA+  N+     +F     IKLEQNYRS S IL +AN LI++
Sbjct: 255 GNAVFAVGDDDQSIYAFRGARVGNMADFVREFGVRHQIKLEQNYRSVSNILDSANQLISH 314

Query: 294 NPHVYQKALFSELAEGEKLKVILANNEDHEAERVIAEI--IAHKFLNRTEYRDYAILYRG 351
           N H   K L ++   GE ++V  A ++  EA+ ++ E+  +A + + R+E    A+LYR 
Sbjct: 315 NTHRLGKNLRTDAGAGEPVRVFEATSDFAEAQWMVDEMKQLAREGIPRSEM---AVLYRS 371

Query: 352 NHQSRLIEKSLTQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPKR 411
           N QSR++E +L    +PY++ GG  FF RAEIK  +AYLR+L N  DD +FLR+VN P R
Sbjct: 372 NAQSRVVETALFNAALPYRVYGGLRFFERAEIKHALAYLRLLENAHDDTSFLRVVNFPPR 431

Query: 412 EIGPATLEKLGSYANMRGKSLFTASFELGLEQHLSGRGLENLRRFTEWLVAIADNAERGN 471
            IG  ++E+L   A   G SL  A         ++GR    +  F   +  + +  E G 
Sbjct: 432 GIGARSIEQLQDVARTSGCSLHDA------VSAVTGRAGVAVGNFAAKIDVMREQTE-GR 484

Query: 472 TVEAVRALVRDIRYEDWLYETSASPKAAEMRMKNVSDLYSWI--VADLEGDNPDQQEKTL 529
           T   +R ++  +     L E     +  + R++N+ +L +       +EG   D     +
Sbjct: 485 T---LREIIELVLAHSGLIEHYRGEREGQDRVENLEELVNAAESFVSIEGFGRDAVALPV 541

Query: 530 KEVVQRLT------------------LRDMMERGE--------------ENDDS------ 551
            E+ + LT                  L    E GE              E+ D+      
Sbjct: 542 DELGKPLTQSPVSQGLDPNLPVVDEPLAPDAETGETLSPLAAFLTHAALESGDNQAQAGQ 601

Query: 552 DAVQLMTLHASKGLEFPYVYLIGAEEGILPHQTSI-DEENVEEERRLMYVGITRAQRELT 610
           DAVQLMT+HA+KGLEF  V++ G EEG+ PH+ S+ D + +EEERRLMYV ITRA++ L 
Sbjct: 602 DAVQLMTVHAAKGLEFDCVFITGMEEGLFPHENSMSDRDGLEEERRLMYVAITRARKRLY 661

Query: 611 FIVCKERRQFGELIKPSQSRFLDELPQDDIEWEVKKKP 648
               + R   G+     +SRF DELP++ ++W    +P
Sbjct: 662 LSHSQTRMLHGQTRYNMKSRFFDELPEECLKWLTPPQP 699